Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02449 ATGGCTCGAGCCGAATTCTCTATGGTGGCAGTTTGTTTAATAATTGTCCTAACTTATAACCAAGTAAAAAGTGTTAAAGGGGGAGAGTCTCTATCAAATGTTGGAGTGAATTGGGGTGCACTTGCATCACACCCTATGGATCCTTACATTGTGACAAATATGTTGAAGGACAATGGAATCAAGAAGGTAAAACTTTTTGATGCTGATCCATGGACTGTTAGTGCCTTTGCTGGTACAGACATTGAAATCATGGTTGGAATTCCTAATGACCAATTGAGTAAATTTGCTAATAGTCTTTCGGATGCAGAGGATTGGGTAAAAGAAAATATCACCAAACATCTCCAAAATAATCTCGTCAACATAAGATACGTAGCGGTTGGAAATGAACCATTCTTGAAAAGTTATGGTGCATCATTTGTGAAGACAACGTTCCCAGCTATGCAAAATATTCTAAAGGCTATTGATAAGGCTGGATTTGGAGACAAAGTGAAGGTAACCACAGCTTTGAATGCAGATGTTTATGAGTCTAATTCAAATAAACCATCCGATGGAGATTTTCGAAACGACATTCGCGATGTTATGAATCAAATACTTCAATTTCTTCACGATAGGAATTCGCCGTTTCTTGTCAACATATACCCTTTCCTTAGTCTATATCAAAGTGAAGGATTTCCAGAAGATTTTGCATTTTTTGATACACAAAGCAGAACAATTGATGACAAAAATGTACAATATAGCAATGTGTTTGATGCAAATTTAGATACACTTGTTTGGGCATTAAAAAAGGCTGGTTATCCTGAGATGACAATTGTTGTTGGTGAAATTGGTTGGCCAACTGATGGTGACAAAAATGCTAATACCAAAAATGCAAAAAGATTTTACCAAGGTTTTCTTAAAAAAATGGCTACCAAAAAAGGTACTCCAATGCTTCCAGGACCTATGAATGTGTATTTATTTTCTCTTTTTGACGAGAATTTAAAGAGCATTGAGCCTGGTAATTTTGAACGTCATTGGGGAATTTTTCGCTACGACGGACAGTCAAAATTTCCCATAGATTTTTCAGGTAATGGAGAAGACAAATGGCCGGAAGGTGCAAAGGGTGTTAGATACCAAGAAAATAAATGGTGTGTCCTAAGTAAAGAGGTTAAGAATATGAGTCTTGTGCCGGAAGCATTAGACTATGCTTGTGCTGGTGCTGATTGTACAAGCTTAGGATATGGTTCTTCTTGTGGAAATTTAGGCATAGCTGGTAATGCATCCTATGCTTTTAATCAATATTTTCAGACAAGAGACCAAAGTGTTGAGGCATGTGATTTCAATGGGTTGGCTAGTATTGTAACAACTGATCCATCAGATGGAACTTGCTTTTTCCCTATTGAAATTGAGAGTGCTGGAGACATGATAACATCAATGCGTTTAGTCACAAGCTTTTTTATTGGACTCTCAATCTTTTTTGTAACATTATAA 1467 0.3674 MARAEFSMVAVCLIIVLTYNQVKSVKGGESLSNVGVNWGALASHPMDPYIVTNMLKDNGIKKVKLFDADPWTVSAFAGTDIEIMVGIPNDQLSKFANSLSDAEDWVKENITKHLQNNLVNIRYVAVGNEPFLKSYGASFVKTTFPAMQNILKAIDKAGFGDKVKVTTALNADVYESNSNKPSDGDFRNDIRDVMNQILQFLHDRNSPFLVNIYPFLSLYQSEGFPEDFAFFDTQSRTIDDKNVQYSNVFDANLDTLVWALKKAGYPEMTIVVGEIGWPTDGDKNANTKNAKRFYQGFLKKMATKKGTPMLPGPMNVYLFSLFDENLKSIEPGNFERHWGIFRYDGQSKFPIDFSGNGEDKWPEGAKGVRYQENKWCVLSKEVKNMSLVPEALDYACAGADCTSLGYGSSCGNLGIAGNASYAFNQYFQTRDQSVEACDFNGLASIVTTDPSDGTCFFPIEIESAGDMITSMRLVTSFFIGLSIFFVTL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02449 488 SMART X8_cls 374 457 IPR012946 -
Car05g02449 488 Pfam Glycosyl hydrolases family 17 34 353 IPR000490 GO:0004553|GO:0005975
Car05g02449 488 ProSitePatterns Glycosyl hydrolases family 17 signature. 268 281 IPR000490 GO:0004553|GO:0005975
Car05g02449 488 SUPERFAMILY (Trans)glycosidases 34 353 IPR017853 -
Car05g02449 488 Gene3D - 370 464 - -
Car05g02449 488 Pfam X8 domain 374 444 IPR012946 -
Car05g02449 488 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3 472 - -
Car05g02449 488 Gene3D Glycosidases 32 360 - -
Car05g02449 488 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 3 472 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02449 Car-Chr5 69559049 69560807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02449 7 466 Miscellaneous Gene Families AT5G64790 53.043 3.63e-180 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02449 - - gmx:100794658 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03134 04 59511620 59514804 Car05g02449 05 69559049 69560807 PCT