Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02156 ATGGACGTGAAAAACAGGGGAGTTTCATTGATAATATTATCGCTCTTTCTGTTACTTTCTTCTATTTTCTCTTCAGCCAATCGAATTATCCACAACAACAACCTAAAAAAAAATCCAATTTCTTTTCATTCCCTCGTTTCCTCTACCATTTACTCCATTCAAGGAAATGTATATCCACTTGGGTTTTACACAGTGACCTTGAACATTGGCAATCCACCAAAGCCTTACGACCTTGACATTGACACTGGGAGTGATATCACATGGATTCAGTGTGATGCACCATGTACAGGTTGCACCAAGCCTGTAGAACAACTTTATAAACCGCATAATAACATTGTGAAATGTACGGATCCCGTATGCGCTGCAATTCAAAATCATCACTGTGATGACCCGAATCATCAGTGTGATTACGAGGTTCTGTATGTAGATCATGGATCATCTCTTGGGGTATTAGTCCGAGACAATTTTCCTATTGGAACATCTAGCAGTGGATCTCTACTACAACCTTTGGTGGCATTTGGGTGTGGGTACGATCAAGAGTTTTCTGGTCCAAATCCGCCACCTGACACAATAGGGGTTCTTGGGCTTGGCAGTGGAAAAACAAGCATTTTATCACAGCTTAGCTCTCAAGGATATATTCGTAATGTGTTGGGTCACTGCTTAAGTTCCAAAGGAGGAGGGTATTTATTCTTTGGAGACCAATTTGTTCCATCATCTGGAATTAATTGGACACCTTTAATTCAGAATTCTCCAGAACAACACTATAACACGGGTCCAGCAGACATACTTTTTAATGGAATGCCAACTTCAGTCAAGAATATTCAACTTATTTTTGATAGTGGAAGCTCCTACACTTACTTCAATTCTGAAGCTTATAACGCTGTTGTTGCTCTGGTGAAAAATGATGTAAAAGGGAAGCTTAGTGATGCATCTGATGATCCATCATTGCCAATTTGTTGGAAGGGTGCGGAGCCTTTCAAATCTTTGAGTGATGTTGATACTTATTTTAAGCCCCTGGATCTAAGTTTCAGCAAATCAAATGATTTGTATTTTCATCTTCCACCTTCAGCTTATCTAATAATAACAGAACATGGTAACGTTTGCTTGGGGATTCTTGACGGCTCTCAAGTAGACCTAGGAGATCTTAACGTAATTGGAGATATCTTTTTGCAAGATAAGGTAGTGATTTATGACAACGAGAACAAACGAGTTGGATGGGCCTCTGCGGATTGTAATACACATCCACACCCATAA 1254 0.3971 MDVKNRGVSLIILSLFLLLSSIFSSANRIIHNNNLKKNPISFHSLVSSTIYSIQGNVYPLGFYTVTLNIGNPPKPYDLDIDTGSDITWIQCDAPCTGCTKPVEQLYKPHNNIVKCTDPVCAAIQNHHCDDPNHQCDYEVLYVDHGSSLGVLVRDNFPIGTSSSGSLLQPLVAFGCGYDQEFSGPNPPPDTIGVLGLGSGKTSILSQLSSQGYIRNVLGHCLSSKGGGYLFFGDQFVPSSGINWTPLIQNSPEQHYNTGPADILFNGMPTSVKNIQLIFDSGSSYTYFNSEAYNAVVALVKNDVKGKLSDASDDPSLPICWKGAEPFKSLSDVDTYFKPLDLSFSKSNDLYFHLPPSAYLIITEHGNVCLGILDGSQVDLGDLNVIGDIFLQDKVVIYDNENKRVGWASADCNTHPHP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02156 417 Pfam Xylanase inhibitor N-terminal 63 233 IPR032861 -
Car05g02156 417 Gene3D Acid Proteases 38 233 IPR021109 -
Car05g02156 417 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 276 287 IPR001969 GO:0004190|GO:0006508
Car05g02156 417 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 2 414 - -
Car05g02156 417 SUPERFAMILY Acid proteases 56 413 IPR021109 -
Car05g02156 417 Gene3D Acid Proteases 234 414 IPR021109 -
Car05g02156 417 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 78 89 IPR001969 GO:0004190|GO:0006508
Car05g02156 417 PANTHER ASPARTYL PROTEASES 2 414 IPR001461 GO:0004190|GO:0006508
Car05g02156 417 PRINTS Pepsin (A1) aspartic protease family signature 69 89 IPR001461 GO:0004190|GO:0006508
Car05g02156 417 PRINTS Pepsin (A1) aspartic protease family signature 276 287 IPR001461 GO:0004190|GO:0006508
Car05g02156 417 PRINTS Pepsin (A1) aspartic protease family signature 383 398 IPR001461 GO:0004190|GO:0006508
Car05g02156 417 ProSiteProfiles Peptidase family A1 domain profile. 63 407 IPR033121 -
Car05g02156 417 Pfam Xylanase inhibitor C-terminal 272 407 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02156 Car-Chr5 66789959 66792896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02156 47 416 Miscellaneous Gene Families AT1G44130 55.200 1.74e-154 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02156 - - gmx:100803640 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02916 04 56270163 56274102 Car05g02156 05 66789959 66792896 PCT