Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02916 ATGGATTTTCAAAACAAATCTTTTCTCACACTTTTTCTCTTTCTTCTTTTTTCTTCCATTTTCCCACTCTCTTTCTCAGCTGCTAATAAACCTCTTCATGCCGATAAACTTCACCCTTTTGGCTCCTCAGCTGTTTTTCCTGTTCATGGGAATGTTTACCCTCTTGGGTATTATACTGTGACCCTCAACATTGGCTATCCCCCAAAGCTTTATGACCTTGACATTGACTCAGGCAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTCATGATCAACTTTATAAACCCAAAAACAACCTTGTGCAATGTGTGGACCAATTGTGTGCTGGAGTGCATTTAACATCAGATCATCACTGTGATTCCCCAGATGATCAGTGTGACTATGAGGTGGAGTATGCAGATCACGGATCGTCTCTGGGGGTCCTCGTCCGAGACTCCATTCCCCTTCAACTCACAAATGGCTCTGTGCTACACCCAAATATAGCCTTTGGATGTGGATATGATCAAAAGTATTCTGGTTCTGCCTCCCTGCCTTCTACCACAGGAGTCCTCGGCCTTGGCAATGGCCGAACAAGCATTTTGTCGCAACTTCACTCTTTAGGTTTGATTCGAAATGTAGTAGGCCATTGCTTAAGTGGTCAAGGAGGAGGGTTTTTATTCTTTGGAGATGATTTCATTCCCTCGTCAGGAATTGTTTGGACACCGATGCTACCTAGTTCTTCAGAAAAACACTATAGTTTAGGACCGGCAGAGCTTCTTTTCAATGGAAAACCTACTGCTGTTAAGGGCCTTGAACTTATTTTCGATAGCGGAAGCTCTTATACATACTTCAATTCCCAAGCTTATAACGTAGTTCTTGATCTGGTTATTAATGATTTAAAGGGAAAACAGTTGAAAAGAGCAACTGAGGATGCATCCCTTCCAATTTGTTGGAAGGGTGCAAAGTCTTTCAAATCTGTAAGTGATGTCAAAAACTATTTCAAGCCCCTGGCATTGAGATTCAAAAAAGTCAAGAATTCGCATATGCTAATTCCACCAGAAGGCTATCTCATTGTCACAAAACATGGAAATGTTTGCTTGGGGATTCTTGATGGCACTGAAATAGGTCTGGGGTATCTTAACATATTAGGAGATATCTCTTTACAAGATAAAATGGTAATTTACGACAACGAGAGACAGCAGATTGGATGGATTTCTTCCAATTGTGACAGGATTCCCAAGTTATAA 1248 0.4159 MDFQNKSFLTLFLFLLFSSIFPLSFSAANKPLHADKLHPFGSSAVFPVHGNVYPLGYYTVTLNIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPHDQLYKPKNNLVQCVDQLCAGVHLTSDHHCDSPDDQCDYEVEYADHGSSLGVLVRDSIPLQLTNGSVLHPNIAFGCGYDQKYSGSASLPSTTGVLGLGNGRTSILSQLHSLGLIRNVVGHCLSGQGGGFLFFGDDFIPSSGIVWTPMLPSSSEKHYSLGPAELLFNGKPTAVKGLELIFDSGSSYTYFNSQAYNVVLDLVINDLKGKQLKRATEDASLPICWKGAKSFKSVSDVKNYFKPLALRFKKVKNSHMLIPPEGYLIVTKHGNVCLGILDGTEIGLGYLNILGDISLQDKMVIYDNERQQIGWISSNCDRIPKL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02916 415 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 412 - -
Car04g02916 415 PANTHER ASPARTYL PROTEASES 9 412 IPR001461 GO:0004190|GO:0006508
Car04g02916 415 Pfam Xylanase inhibitor N-terminal 58 230 IPR032861 -
Car04g02916 415 SUPERFAMILY Acid proteases 50 413 IPR021109 -
Car04g02916 415 Gene3D Acid Proteases 231 412 IPR021109 -
Car04g02916 415 Gene3D Acid Proteases 36 230 IPR021109 -
Car04g02916 415 ProSiteProfiles Peptidase family A1 domain profile. 58 405 IPR033121 -
Car04g02916 415 PRINTS Pepsin (A1) aspartic protease family signature 64 84 IPR001461 GO:0004190|GO:0006508
Car04g02916 415 PRINTS Pepsin (A1) aspartic protease family signature 273 284 IPR001461 GO:0004190|GO:0006508
Car04g02916 415 PRINTS Pepsin (A1) aspartic protease family signature 381 396 IPR001461 GO:0004190|GO:0006508
Car04g02916 415 Pfam Xylanase inhibitor C-terminal 272 404 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02916 Car-Chr4 56270163 56274102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02916 42 414 Miscellaneous Gene Families AT1G44130 59.626 3.14e-173 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02916 - - gmx:100790299 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02916 04 56270163 56274102 Car04g02916 04 56270163 56274102 ECH
Car04g02916 04 56270163 56274102 Car05g02156 05 66789959 66792896 PCT