Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02029 ATGCCTGGTTTTGTTGTTGGAAAGAAGAGATTTATAAAGTCAAACATGTGTTTCACTAATTTTGTCAATCAAGATAAATCCATTCGTACACAAAGCGATCATAGTTTAACCATTGAGGCTTTGGATGAAGAAGGTAGCCCTATTCTACCTGGGCTTCCTGATGATGTTGCAAAGTATTGCCTTGCACTTGTTCCCCGTTCCAACTTCCCAGCCATGGGTGGTGTCTGTAAGAGGTGGAGGTTGTTTATGCAAAGCAAAGAATTTGTAATGGTGCGAAAATTGGCAGGGGTGCTTGAGGAATGGCTCTATTTCTTAACAAATGACAGTGAAGGGAGAGAAAGCCACTGGGAGGTCATGGATTGTCTTGGTAACAAATGTCTATCCATTCCACCAATGCCTGGTCCAGAAAAGGCGTCGTTCGGGGTAGTGGTTCTTAATGGAAAGCTAATTATCATGGCTGGTTATTCAGCTATTGATGGAGTTGCCGTCGCCTCAGCAGAAGTTTACCAATATGACTCTTGCCTTAACAGTTGGAGCAGATTATCAAACATGAATGTGGCTCGTTTTGACTTCGCTTGTGCTGAAGTGAACGGTTTGGTTTATATTGTTGGAGGCCATGGGGCAGACGGCAACAGTCTCTCTAGTGTTGAGATGTATGATCCAGATACTGATAAGTGGACACTGATAGAGAGCCTTCGTCGCCCGAGGTGGGGTTGCTTTGCTTGCGGATTTGAGAGTAAACTCTATGTTATGGGTGGAAGGTCAAGCTTTACTATTGGAAATTCCAAGTTTGTTGATATATATAACCCCGAGAAGCACAGCTGGTGCGATATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTATTGGGGAATAAGTTGTTCTGTACTGAGTGGAAAAATCAGCGAAAGCTTTCAATATTCAGTCCAGAGGACAACTCATGGACAATGGTGCCCGTCCCAATGACAGGGAGCTTGAGTGTTGGTTTTCAATTTGGGATACTGGACGGAAAATTATTGCTATTTCCGTTGGAGAAAGAACCTACTAATCAAACATTGTTATATGATCCAAATGCCGCTTTAGGGTCAGAGTGGCAAACTTCAAACATAAGGCCATCTGGTTTATGCCTGTGCAGTGTAACAATCAAGGCATGA 1158 0.4326 MPGFVVGKKRFIKSNMCFTNFVNQDKSIRTQSDHSLTIEALDEEGSPILPGLPDDVAKYCLALVPRSNFPAMGGVCKRWRLFMQSKEFVMVRKLAGVLEEWLYFLTNDSEGRESHWEVMDCLGNKCLSIPPMPGPEKASFGVVVLNGKLIIMAGYSAIDGVAVASAEVYQYDSCLNSWSRLSNMNVARFDFACAEVNGLVYIVGGHGADGNSLSSVEMYDPDTDKWTLIESLRRPRWGCFACGFESKLYVMGGRSSFTIGNSKFVDIYNPEKHSWCDIKNGCVMVTAHAVLGNKLFCTEWKNQRKLSIFSPEDNSWTMVPVPMTGSLSVGFQFGILDGKLLLFPLEKEPTNQTLLYDPNAALGSEWQTSNIRPSGLCLCSVTIKA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02029 385 Gene3D - 86 383 IPR015915 GO:0005515
Car05g02029 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Car05g02029 385 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Car05g02029 385 PANTHER KELCH REPEAT F-BOX PROTEIN 1 385 - -
Car05g02029 385 PANTHER OS02G0202900 PROTEIN 1 385 IPR045887 -
Car05g02029 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Car05g02029 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Car05g02029 385 SMART kelc_smart 247 295 IPR006652 GO:0005515
Car05g02029 385 SUPERFAMILY Kelch motif 99 360 IPR015915 GO:0005515
Car05g02029 385 Pfam Kelch motif 236 279 IPR011498 GO:0005515
Car05g02029 385 SUPERFAMILY F-box domain 42 89 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02029 Car-Chr5 65553663 65555028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02029 52 230 Miscellaneous Gene Families AT4G33900 28.718 8.50e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02029 - - gmx:100802912 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02029 05 65553663 65555028 Car06g01109 06 10760239 10761466 PCT