Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01630 ATGAATAATAATCAACCAAAGAACGTTGTTGCAACATCATTGTTTGGTCGTTCTATAACATCACCACAGCAACAGCAATGGACTCATCTTCTATCTAGATCACACCCTCAACAAACCAATTTCCCTACTCAATTTCAGTTTTCAGAACCCCAATCACATTCCAATGTGTTTTCACAAGCTCACTATGCACAATTGCAGTCTCAAGCTGCTGCACATGCTTCATTACAATCACAGATTCACCCTCTTGCTCCATTGCATAATGCTAATGCCAATGTTGCGACCACTCCGGCGATTGGAAGCTCCAAACGAGGAATCCAAAGGACCACCTCACGGACTCCTGGATCGTCCGGTGCAAACCAGAATGTGTCGGTTAAGACCATGGAATTGACTCCGGCTACTCGGAGAAGGAAGAGGGAGTTACCGGAGAAGGAAATTATGGAGAAAGTGGCTGCGATTTTGCCGGAGTCTGCTCTTTATACTCATTTGCTTGATTTTGAGGCTAAGATGGATGCTGCTTTGGCCAAGAGAAAGGTTGACATGCAAGAGGCTATTAGATGCCCTCCTCATGTTCAGAAAACTCTTCGTATTTACGTGTTTAATACATTCTCGGATCGGCTGAAAACTGGCTCTGAGGATGAAACTGTTGAGGAATCTTCTTGGTCTTTGAAGATAATTGGAAGGATAGTGGAAGATGGTGATGATTCTGTGTCTGGAATTTCGCAGCGATCAAGTGCTTCGAACTCGAAGAAGTTCTCTGATTTCTTCAAGAAAATTATCATATGCTTGGATAAGAACCTTTATCCTGAAAACCATGTTATTGTGTGGGACAGTGCGCGTTCGCCTAAACCGCAGGATGGTTTCGAGGTGAAGAGGAAAGGAGACAAAGAATTCACTGCGGTGATCAAAATGGAATTGAATTATTCGCCTGAGAAGTTCATGGTTTCAGCACCATTGTCTAAACTTTTAGGGGTTGAGGTTGAGACTCGCCCAAGAATAATAGCTGCTCTTTGGCATTATGTGAAGTCAAGGAAGCTTCAATGTCCGGATGAGCCTTCATTCTTCATTTGCGATCCTTCCCTCCAAAGGGTTTTCGGTCAAGAGAAGATGGGATTCAACATGGCTGCTGAGAAGTTGTTAGATCATTTGTCACAACCAAAGCCTATATATTTGGAGCATAACATCAAGCTTTCTGGAAATTGTCCAGCTGGAACTGCATGTTATGATGTACATGTTGATGTGCCTATTCCTCTGCAGAAAGAAATGTCTGTATTCTTGGCAAGCAATAGTGTTGAGAGTAACAAAGAGATTGAATCTTATGATGAGATGATTTGCAATTCCCTAAAAAAGATCCAAGAGCATCGTAGAAGACGCGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATCAATGCTATGGTCGCTTCTCAGAGCAAGGATTTAAAACTCGTTGGTGGAGATTCCAGTCGCAATTCTGAAAAGGAACCGTGTTCTGAATTTTATAATCGACCATGGGCTGAGGATGCTGTCATTCGGTACTTGAATCGCAAAGGTGCTGGAAAAGATACGCCTGAGGGCAAGTGA 1587 0.4291 MNNNQPKNVVATSLFGRSITSPQQQQWTHLLSRSHPQQTNFPTQFQFSEPQSHSNVFSQAHYAQLQSQAAAHASLQSQIHPLAPLHNANANVATTPAIGSSKRGIQRTTSRTPGSSGANQNVSVKTMELTPATRRRKRELPEKEIMEKVAAILPESALYTHLLDFEAKMDAALAKRKVDMQEAIRCPPHVQKTLRIYVFNTFSDRLKTGSEDETVEESSWSLKIIGRIVEDGDDSVSGISQRSSASNSKKFSDFFKKIIICLDKNLYPENHVIVWDSARSPKPQDGFEVKRKGDKEFTAVIKMELNYSPEKFMVSAPLSKLLGVEVETRPRIIAALWHYVKSRKLQCPDEPSFFICDPSLQRVFGQEKMGFNMAAEKLLDHLSQPKPIYLEHNIKLSGNCPAGTACYDVHVDVPIPLQKEMSVFLASNSVESNKEIESYDEMICNSLKKIQEHRRRRAFFLSFSQSPAEFINAMVASQSKDLKLVGGDSSRNSEKEPCSEFYNRPWAEDAVIRYLNRKGAGKDTPEGK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01630 528 ProSiteProfiles SWIB/MDM2 domain profile. 307 384 IPR003121 -
Car05g01630 528 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 79 525 - -
Car05g01630 528 CDD SWIB_like 314 382 - -
Car05g01630 528 Gene3D SWIB/MDM2 domain 305 389 IPR036885 -
Car05g01630 528 SUPERFAMILY SWIB/MDM2 domain 303 392 IPR036885 -
Car05g01630 528 SMART swib_2 308 387 IPR019835 -
Car05g01630 528 Pfam SWIB/MDM2 domain 311 382 IPR003121 -
Car05g01630 528 MobiDBLite consensus disorder prediction 99 120 - -
Car05g01630 528 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 79 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01630 Car-Chr5 61063502 61066172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Car05g01630 SWIB 3.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01630 K11650 - gmx:100784907 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01149 07 10265750 10269727 Car05g01630 05 61063502 61066172 ECH
Car05g01630 05 61063502 61066172 Car05g01630 05 61063502 61066172 ECH