Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01606 ATGGAAGGAAAAACCAACAAGAACAAAGTTGAGAAAGTTGAATTAGGCTGTAATTTCATGGGAAAAATCTTCAAACTCAAAAACAACAAGCTAAGAAATTCATCAGTTCATTCACTACCCATAAAGAATACTAACAACACACATCAAAACGAATCAAAAGGGTCACCAAATCATGACTCAAAAGTTCCAACAAGAAAAAGTATCTCAAGAACTTCAATTCAATTACAACAGAACCAAAACACCATCGACGAAACCAAGCAACATAAAGAGCCTAATGGAAATTCCTTAGCACTTGCAAGGATAAGTACTAGTACTCCTCACCGCGACAACAATGAAAACAAATCTCCAAGCAAAGATTTTAGCCCATTAAGACTCACTGGAAACTTGCTTGTGAATAATAGCTATAACAGTCCAAGAACAAGTGTTACCAAGAATAACAAAGAATTGAATTCTGTTTCATATTCTGTGAACAATGGTGTAATGGGGAATATTATGAGGAAAAGTGGTGATGGGGTGGCACAATTTCGAAGTCCTAAGAGCAACAGAGTTAACCCTGAAGAGTTGAAGTCAATGGGAAATGAAGCTTACAAACAAGGAAGATTTTCAGAAGCTTTGGTTTTGTATGAAAAGGCTATTGCTATTGATTCCAATAAGGCAACTTATCATTGCAATAAAAGTGCTGCTTTGATTGGTTTAGGAAGGTTTCAGCATGCAATTGTTGAGTGTGAGGAAGCTATTAAGATTCAACCTTCCTATGCTAGAGCTCATAGCCGTTTGGCAACAATATATTTTAGGTTGGGAGAAGCAGAAAAGGCATTGAATTGCAATAAAGAAACTCCATATTTTGATTCAGAACTTGCTTTACAAGCTCAAGCTCTTCAAATTCACCTTAACAGATGCAGTGAAGCAAGGAAAGTCAATGATTGGAAAATTATATTGAAGGAAACACAGTCTGCAATTTCCTTAGGTGCAGATTCATCTCCAAAGGTCTATGCTTTACAAACTGAAGCCTTGTTGAAGCTTTTAAGGCATCAAGAAGCATATGCCACCTATGAGAAAATTCCAAAATTTGACCTTGATTGGTGTAAGAAATTATTTGGACCAGCTTCTAGTGCTTACATTCTGATGATAGGAGCACAAGTTTACTCGGCAGCCGGCAGGTTTGAGGATGCTGTGACAGCATCACAACAAGCAGCTAAACTTGATCCAAGAAACAGCGAGGTGAATGCAGTGGTAAGAAGAGCAAGAGCCGTGACATCTGCAAGATTGAGTGGTAACTTGCTCTTCAAGGCATCAAAATTCATCGAAGCATGTGCGGTATACAACGAAGGACTAGAGCATGATGCATACAACTCAGTTCTGCTATGTAACAGGGCAGCGTGTCGTTCTAAATTAGGCCAATTCGAGAAAGCAATTGAAGATTGCAATGTAGCTCTTATAGTTCAGCCTAGTTATAGCAAGGCAATGTTGCGCCGGGCTGATTGTAATGCCAAGTTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGTTGATAAGAGAAAAGCCAGGGGATGAGGAGGTGGCTAGGGCTTTGTTTGAGATCCAGTTAAAACTCAAGATGTTACGCGGCGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGGTTTGCATCTCAAGCAATGATAGGTTTAGACATTATGTAACCTCACCTGGTAAGTCATGTTTGATTCCATTTTCTATGTAA 1731 0.3859 MEGKTNKNKVEKVELGCNFMGKIFKLKNNKLRNSSVHSLPIKNTNNTHQNESKGSPNHDSKVPTRKSISRTSIQLQQNQNTIDETKQHKEPNGNSLALARISTSTPHRDNNENKSPSKDFSPLRLTGNLLVNNSYNSPRTSVTKNNKELNSVSYSVNNGVMGNIMRKSGDGVAQFRSPKSNRVNPEELKSMGNEAYKQGRFSEALVLYEKAIAIDSNKATYHCNKSAALIGLGRFQHAIVECEEAIKIQPSYARAHSRLATIYFRLGEAEKALNCNKETPYFDSELALQAQALQIHLNRCSEARKVNDWKIILKETQSAISLGADSSPKVYALQTEALLKLLRHQEAYATYEKIPKFDLDWCKKLFGPASSAYILMIGAQVYSAAGRFEDAVTASQQAAKLDPRNSEVNAVVRRARAVTSARLSGNLLFKASKFIEACAVYNEGLEHDAYNSVLLCNRAACRSKLGQFEKAIEDCNVALIVQPSYSKAMLRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEIQLKLKMLRGEDIKDLKFGSNLVCISSNDRFRHYVTSPGKSCLIPFSM 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01606 576 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 571 IPR044534 -
Car05g01606 576 MobiDBLite consensus disorder prediction 96 124 - -
Car05g01606 576 SUPERFAMILY TPR-like 423 534 IPR011990 GO:0005515
Car05g01606 576 SMART tpr_5 418 451 IPR019734 GO:0005515
Car05g01606 576 SMART tpr_5 372 405 IPR019734 GO:0005515
Car05g01606 576 SMART tpr_5 486 519 IPR019734 GO:0005515
Car05g01606 576 SMART tpr_5 452 485 IPR019734 GO:0005515
Car05g01606 576 SMART tpr_5 253 286 IPR019734 GO:0005515
Car05g01606 576 SMART tpr_5 219 252 IPR019734 GO:0005515
Car05g01606 576 SMART tpr_5 185 218 IPR019734 GO:0005515
Car05g01606 576 Coils Coil 492 512 - -
Car05g01606 576 SUPERFAMILY TPR-like 184 407 IPR011990 GO:0005515
Car05g01606 576 ProSiteProfiles TPR repeat profile. 185 218 IPR019734 GO:0005515
Car05g01606 576 Gene3D Tetratricopeptide repeat domain 184 537 IPR011990 GO:0005515
Car05g01606 576 MobiDBLite consensus disorder prediction 66 82 - -
Car05g01606 576 MobiDBLite consensus disorder prediction 37 124 - -
Car05g01606 576 Pfam TPR repeat 192 227 - -
Car05g01606 576 MobiDBLite consensus disorder prediction 37 53 - -
Car05g01606 576 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 571 - -
Car05g01606 576 Pfam Tetratricopeptide repeat 379 451 - -
Car05g01606 576 Pfam Tetratricopeptide repeat 464 519 - -
Car05g01606 576 ProSiteProfiles TPR repeat profile. 372 405 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01606 Car-Chr5 60759226 60763301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01606 197 516 Glycosyltransferase AT3G04240 21.239 6.32e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01606 K09527 - gmx:100814381 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01106 02 30881463 30886129 Car05g01606 05 60759226 60763301 PCT