Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01488 ATGGAAGAAAACTCAGAACAAGACAACATCCACCAAACCCAACGCCCCTCTgaagaacaaaacgacgactacgaccaagaagacgaagatgaagaagaatacgacgacgacgacgaagacgtcgtcgTTTTGGAGGAACCCACTCACCGAACCCCCCAATCCCCATTGTCCCGTCTCAGAGAACAGAAATTCAAGCTTGAAACCCTTTCCCGACGACTTTCATCGGAGCTAGTCCCAATCCGAGTCCACGACGTTCTTATTCGCGGCAACACCAAGACCAAAGACTGGGTGATCGAAGCCGAAATCAAGGGAATCGAGAATGCCACTACCATGCAGGAACTCATTCGCGCATCCGAAATCGCACTCGCTAGGCTTCAGAATCTCGGTGTTTTCGATTCTAGCAAGCTAAGACTCGAGCCTGGACCGCCGGAGTTGCCTAACACTGCCAATGTCGTCATCGACATCGTTGAGGCTGTTAACAAAACCTCCGGTGAATTCGGTGTTTATACCAAACCATCGACTAGTTCTTGGACTGGTGAAGGTACTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCAATGGGATGCTTCTTTGGCTTACGGTGCCAGCCAAGCAACAGAGGTGAGTGTAGGGGTATATGCCCCTCGACTTAAAGGAACCTCAACTCCCATTGTAGCACGACTGTCCATGCTTTCCCAAGATTGGCAAGAATTTTCTTCATACAAAGAGCAGTTGTTGGGCATGTCTCTTGGCTTAATATCGACAAAGTACCATGACTTGGTATACACTCTTGGATGGCGTACCTTAACAGATCCATCACAAATGTCGTCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTGCTATCATCTTTGAAGTATACGTTTAAAATTGATAGAAGAAACTCAGCAATTAGGCCTACAAAAGGACATGCTTTTGTTTCTACCACTCACCTTGGTGGCCTTACACCAGACCATCGGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGTTCGGTATGCTGTCCCCTTTGGGTTTTACAATACAGCTCTGAACCTAGGGATTTCTGCTGGTGCCGTTTTTCCATGGGGACAAGGTTTCATGAACAAGCCATCTCCCGTTCCTGAAAGGTTTTATTTGGGTGGTGACTTCTCTCCAGTTTGCACCCTAGGAGGGCCAATAACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCGGCTGAACCACGAAGACAAAGCAGAGATGTATTTAATGATGACAATAATGATTCCTCTAAATGGGACTTCATTGGAGGAGATCTTGCTGTTACAGCTTTTGCAGACCTCTCTTTTGATCTTCCAATTAGGTGGTTAAGAGAACACGGGATCCATGGCCATGTTTTTGCTGGTGCTGGGAATACCGCTAAATTAACTCAGAATGAATATAAGAACTTCTCTCCTCGGAAGTTTTTAGATTCCTTTCGAACATCAGTGGGATGTGGATTTGTTGTTCCCACTAGACTTTTCCGCCTAGAGGGTAACTACTACTACATACTCAAGCAGAATGAACAAGATCGTGGTAAAAATGGATTTAGGTTCAGCTTCTCAGCTCCTTCATAG 1602 0.4357 MEENSEQDNIHQTQRPSEEQNDDYDQEDEDEEEYDDDDEDVVVLEEPTHRTPQSPLSRLREQKFKLETLSRRLSSELVPIRVHDVLIRGNTKTKDWVIEAEIKGIENATTMQELIRASEIALARLQNLGVFDSSKLRLEPGPPELPNTANVVIDIVEAVNKTSGEFGVYTKPSTSSWTGEGTLKYKNLLGYGDQWDASLAYGASQATEVSVGVYAPRLKGTSTPIVARLSMLSQDWQEFSSYKEQLLGMSLGLISTKYHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSAIRPTKGHAFVSTTHLGGLTPDHRSLRFLRQEFDVRYAVPFGFYNTALNLGISAGAVFPWGQGFMNKPSPVPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPAEPRRQSRDVFNDDNNDSSKWDFIGGDLAVTAFADLSFDLPIRWLREHGIHGHVFAGAGNTAKLTQNEYKNFSPRKFLDSFRTSVGCGFVVPTRLFRLEGNYYYILKQNEQDRGKNGFRFSFSAPS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01488 533 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 11 531 IPR039910 -
Car05g01488 533 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 11 531 - -
Car05g01488 533 Pfam Surface antigen variable number repeat 80 157 IPR010827 GO:0019867
Car05g01488 533 Gene3D membrane protein fhac 79 158 - -
Car05g01488 533 MobiDBLite consensus disorder prediction 1 57 - -
Car05g01488 533 MobiDBLite consensus disorder prediction 1 20 - -
Car05g01488 533 Pfam Omp85 superfamily domain 187 530 IPR000184 GO:0019867
Car05g01488 533 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 169 531 - -
Car05g01488 533 MobiDBLite consensus disorder prediction 21 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01488 Car-Chr5 59185550 59192840 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01488 K07277 - gmx:100785408 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01488 05 59185550 59192840 Car05g01488 05 59185550 59192840 ECH
Car05g01488 05 59185550 59192840 Car02g01722 02 46324296 46328140 PCT