Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01139 ATGTCGGAAAAGGGCCGACCACTACCAAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCGGCTGAGGGGTTCACAGTGATTTTTAATAAGGCCAGGGATGAGAAAAAGACAGGTGGCAATCCTGAGTCACCAGGAAAGGCTGCGACTGAACTTCATAGCAAACCTGCATTAGATCCTGCCAAACCTCAGAGTAAAAAATGGTTCTGCTGCATACAAAACCCTCCTGCAGAATCATAA 240 0.4625 MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKAATELHSKPALDPAKPQSKKWFCCIQNPPAES 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01139 79 MobiDBLite consensus disorder prediction 32 66 - -
Car05g01139 79 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 2 63 - -
Car05g01139 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Car05g01139 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 2 63 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01139 Car-Chr5 53788889 53793443 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01139 - - gmx:100305826 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01139 05 53788889 53793443 Car05g01139 05 53788889 53793443 ECH
Car05g01139 05 53788889 53793443 Car02g02146 02 51688989 51691274 PCT