Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02146 ATGTCGACGGAAAACGGTAGGCCACTTCCAAAGTTCGGTGAATGGGATGTCAATGATCCAGCTTCAGCTGAAGGTTACACAGTGATTTTTAACAAAGCAAGGGATGAGAAAAAGACAGGTGGCAAACCCGAGTCACCTGCAAAGGCAAATCATCAAACCAAACCTCCAGCAGATCATGGCAAAACTCAGAGTAAAAGTTGGTTTTGCTGCATACATAGTTCTCCAGCAGAATCGTAG 237 0.4473 MSTENGRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPESPAKANHQTKPPADHGKTQSKSWFCCIHSSPAES 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02146 78 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 65 IPR040387 -
Car02g02146 78 MobiDBLite consensus disorder prediction 1 20 - -
Car02g02146 78 MobiDBLite consensus disorder prediction 30 44 - -
Car02g02146 78 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 1 65 - -
Car02g02146 78 MobiDBLite consensus disorder prediction 30 66 - -
Car02g02146 78 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 4 39 IPR008700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02146 Car-Chr2 51688989 51691274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02146 - - gmx:100817920 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02146 02 51688989 51691274 Car02g02146 02 51688989 51691274 ECH
Car05g01139 05 53788889 53793443 Car02g02146 02 51688989 51691274 PCT