Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01072 ATGGCTCTTTCTCATGTACTTCCTCTGCTTATTCTTCACTACTCATTTTTGGTTGCATTGGTATCTGGATGGAAAACATTGCAAGGATCTCCACCATTGGTAATAGCACGCGGCGGTTTTTCGGGGATATTTCCAGATTCAAGTTCACCTTCCTATAACTTAGCACTAAAAACAAGTTCCCTAAATGTCACTCTATGGTGTGATGTTCAACTGACAAAGGATGGAGTTGGAATTTGTTTTCCAGACTTCAAGCTTGACAACGCTACTGACATTTCAGTTGTTTATCCGGGCAAAGCCAAGGATTACTCGGTTAATAACTTTTCGACCCGAGGATGGTTTTCTGCGGATTACAACTTCAATGAATTAGCAAATGTTTCCCTGGTTCAGGGAGTGTATTCGCGAACTAATAAGTTTGATGGAAGTAAATATCACATTCTCAAAGTTGAAGATGTAGCTAAATTAGTAAAATCACCGTCAACAGGCTTATGGTTAAATGTTCAGCATGATACATTCTACAAGCATCACAATTTGAGTGTAAAGAAATTTCTTCTATCTCTTTCTACTAAAGGAGTGTCTATCAATTACATCTCATCAACGAACGTGGATTTTCTAAGACGAGTAAGATCAAATTCTAGTCTTAGAAAATCCATCTTGATCTTCAGGTTTCTAGAGAAGCATAAGATTGAACCTACAACCAACCAAACTTATGGTGCACTTCTGAAAAACCTCACATTGATAAGGAAATTTGCTTCAGGAATTCTTGTTCCTAAAGGCTATATATGGCCTGTAGACTCAGAACTTTATCTACAGCAACATACTTCAATTGTCTCAGATGCTCATAAAAAAGGGCTAAAAGTTTTTGTTTCAGAAATTGTTAATGATGTTTCATTCAGCTACAATTTCAGTTATGATCCTATGGCTGAGTGCTTGTCTTTCATTGACAATGGTAACTTTTCTGTTGATGGTGTGTTGTCTGATTTCCCAGTAACTCCATCTGCAGCCATAAATTGCCTTTCTGGTCTAGGAAAAAAGGCCAAAAAACAAGTGGAGACTTTGGTTATCACAAAATATGGAGCAAGTGGAGACTATCCAGCTTGTACTGATCTTGCATATAAGAAAGCTAAATCAGATGGAGCAGATGTACTTGATTGTCCTGTTCAAATGTCCAAGGATGGAATACCCTTTTGCTTAAGCTCTATAGATCTTTCAATGAGCACAACAGTTGCTAATACAAAATTCAGAAACCATACAGCCACTATTCCAGAGATTAAAAATGGCAGTGGCATATATACATTTAGCTTGACATGGAATGAAATAAAAACATTGACTCCCTCAATATTGAAACCTTATGAGAAATACCTATTGTTCAGGAATCCAAAATTCAAAAATCAAGGGAATTTTGTAACCTTGTCTGAGTTTTTGTCTTTGGCTAAAGGCTCTGGCATCTTGATCAGCATAGAGAATGCAGCCTACCTCGCCGAGAAGCGAGGATTAAGTGTGACCAATGCAGTCCTTAACACTCTAAAAAAAGCAGGTTATGATAAACCAAAATCTCCAAAAGTTATGATTCAATCAACTCACAGCTCAGTACTAAAGATATTCAAGAATAAATCAAAATATGAAAGGGTTTACAAAGTTGACGAAAATATTCATGACGCTGATGACAAAGCTGTTGAAGACATAAAAACATTTGCTGATTCTGTTGTAATACAAAAGGCATCAGTTTTTCCTCAAAGTGAAGCTTTTCTAGTTAACTCTACAAATACTGTAGAAAGGTTTCAATCATTTAAGCTATCAGTTTATGTAGAAACTTTCAGCAATGAATTTGTATCTCAAGCATGGGATTATTACTCAGATGCATTTGTTGAGATCAACTCATTTGTCATTGGTGCCAAGGTTAATGGCATTATTACTGACTTTCCAAAGACTGCTGCAAGATACACGAAGAACAAGTGTTTAAAGCATCGGAACAAAGCACCTTATACGAGGCCTATTGAACCTGGAAAACTTTTAAAACAAATTACACAATTATACCTTCCAGCACCTGTCCCTCCACTCCCAATCTTAAATGATAACAATGTGACAGAGCCACCTTTGCCAAGTGTTTCTAGATAA 2115 0.3674 MALSHVLPLLILHYSFLVALVSGWKTLQGSPPLVIARGGFSGIFPDSSSPSYNLALKTSSLNVTLWCDVQLTKDGVGICFPDFKLDNATDISVVYPGKAKDYSVNNFSTRGWFSADYNFNELANVSLVQGVYSRTNKFDGSKYHILKVEDVAKLVKSPSTGLWLNVQHDTFYKHHNLSVKKFLLSLSTKGVSINYISSTNVDFLRRVRSNSSLRKSILIFRFLEKHKIEPTTNQTYGALLKNLTLIRKFASGILVPKGYIWPVDSELYLQQHTSIVSDAHKKGLKVFVSEIVNDVSFSYNFSYDPMAECLSFIDNGNFSVDGVLSDFPVTPSAAINCLSGLGKKAKKQVETLVITKYGASGDYPACTDLAYKKAKSDGADVLDCPVQMSKDGIPFCLSSIDLSMSTTVANTKFRNHTATIPEIKNGSGIYTFSLTWNEIKTLTPSILKPYEKYLLFRNPKFKNQGNFVTLSEFLSLAKGSGILISIENAAYLAEKRGLSVTNAVLNTLKKAGYDKPKSPKVMIQSTHSSVLKIFKNKSKYERVYKVDENIHDADDKAVEDIKTFADSVVIQKASVFPQSEAFLVNSTNTVERFQSFKLSVYVETFSNEFVSQAWDYYSDAFVEINSFVIGAKVNGIITDFPKTAARYTKNKCLKHRNKAPYTRPIEPGKLLKQITQLYLPAPVPPLPILNDNNVTEPPLPSVSR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01072 704 Pfam Glycerophosphoryl diester phosphodiesterase family 358 643 IPR030395 GO:0006629|GO:0008081
Car05g01072 704 Pfam Glycerophosphoryl diester phosphodiesterase family 39 294 IPR030395 GO:0006629|GO:0008081
Car05g01072 704 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN 1 703 - -
Car05g01072 704 Gene3D Phosphatidylinositol (PI) phosphodiesterase 350 648 IPR017946 GO:0006629|GO:0008081
Car05g01072 704 Gene3D Phosphatidylinositol (PI) phosphodiesterase 31 334 IPR017946 GO:0006629|GO:0008081
Car05g01072 704 SUPERFAMILY PLC-like phosphodiesterases 31 334 IPR017946 GO:0006629|GO:0008081
Car05g01072 704 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 703 - -
Car05g01072 704 SUPERFAMILY PLC-like phosphodiesterases 352 647 IPR017946 GO:0006629|GO:0008081
Car05g01072 704 ProSiteProfiles GP-PDE domain profile. 351 648 IPR030395 GO:0006629|GO:0008081
Car05g01072 704 CDD GDPD_SHV3_repeat_1 32 334 - -
Car05g01072 704 ProSiteProfiles GP-PDE domain profile. 32 335 IPR030395 GO:0006629|GO:0008081
Car05g01072 704 CDD GDPD_SHV3_repeat_2 352 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01072 Car-Chr5 52303255 52309081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01072 22 703 Receptor kinase-like Gene Family AT4G26690 56.560 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01072 - - gmx:100799882 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01072 05 52303255 52309081 Car05g01072 05 52303255 52309081 ECH
Car05g01072 05 52303255 52309081 Car02g02090 02 51260089 51264937 PCT