Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03350 ATGGATCTGTATCTTCTCGGTTGGATTCTAAGCACCGTTTTGAGCCTCTTTGCGCTCTACAGTTTGGTTTTCGCCGGGAAAATAAGTCGCGCCGCGCCGAAGAAGCCGGTTCAGTCTGATGATAGCGTGACGAACGATGCTGGTGAACGTAAATCGGAGAAACTTAACGGAGACGCTGACGTCATTATTGTTGGAGCCGGTGTCGCTGGCGCTGCACTCGCTCACACTCTCGGCAAGGATGGACGCCGAGTGCTTGTCATTGAAAGAGATCTGAGTGAGCCTGATAGAATTGTTGGAGAGTTGCTACAACCTGGCGGCTATCTCAAATTAGTTGAACTGGGCCTTGAAGATTGTGTGAACAATATTGATGCGCAGCAAGTGTTTGGTTATGCACTTTTCAAAGATGGGAAACATACTCGTCTCTCTTATCCCTTGGATAAGTTTCACTCAGATGTATCTGGCAGAAGCTTTCACAATGGCCGTTTTATTCAGAGAATGCGAGAGAAGGCTGCTTCCCTTCCCAATGTAAATTTGGAGCAAGGAACAGTCACTTCCCTACATGAAGAGAAGGGGACAATCAAAGGTGTACAATACAAGAATAAAGATGGTCAGGAATTGACAGCATATGCTCCTCTTACCATTGTTTGTGATGGATGTTTCTCAAACTTGCGCCGTTCTCTTTGCAACCCTAAGGTAGACAGTCCCTCTTGTTTTGTTGGCTTAGTTTTAGAGAACTGTGAACTTCCATGTGCCAATCATGGCCACGTCATACTTGGAGATCCTTCGCCAATTCTTTTCTATCCTATAAGTAGTTCAGAAATTCGTTGTCTGGTTGATGTACCTGGTCAGAAGGTTCCTTCTATTTCAAATGGTGATATGACAAAGTATCTAAAGACAACGGTTGCTCCACAGGTACCCCCTGAGCTTTATGATGCATTCATAGCCGCAGTGGACAAAGGCAACATAAGGACAATGCCGAACAGAAGTATGCCAGCAGATCCTCGTCCTACTCCTGGAGCCGTATTGATGGGAGATGCATTCAACATGCGACACCCCCTAACAGGGGGAGGAATGACCGTAGCATTGTCTGATATTGTGGTATTGAGAAATCTTCTCAGGCCTTTGCGTGACCTGAATGATGCACCCAAACTTTGCAAATACCTCGAGTCCTTTTATACTTTGCGCAAGCCTGTAGCATCCACCATAAATACATTGGCAGGAGCTCTTTACAAGGTTTTTTGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGTCAAGCTTGTTTTGATTATCTTAGCCTTGGAGGCCTATTCTCGGAGGGACCGATATCTTTACTTTCAGGATTAAACCCTCGACCCTTAAGCTTGGTTCTCCATTTCTTTGCTGTTGCAGTATTTGGTGTTGGCCGTTTACTACTACCCTTTCCTTCACCTAAACGGATGTGGATCGGAGCTAGGTTAATCTCTGGTGCATCTGGAATTATCTTACCCATAATTAAGGCTGAAGGAATTCGCCAAATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAGCTCCCCCGGCTTCACAAGAGTGA 1578 0.4563 MDLYLLGWILSTVLSLFALYSLVFAGKISRAAPKKPVQSDDSVTNDAGERKSEKLNGDADVIIVGAGVAGAALAHTLGKDGRRVLVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVNNIDAQQVFGYALFKDGKHTRLSYPLDKFHSDVSGRSFHNGRFIQRMREKAASLPNVNLEQGTVTSLHEEKGTIKGVQYKNKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDSPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSSEIRCLVDVPGQKVPSISNGDMTKYLKTTVAPQVPPELYDAFIAAVDKGNIRTMPNRSMPADPRPTPGAVLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPKLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRMWIGARLISGASGIILPIIKAEGIRQMFFPATVPAYYRAPPASQE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03350 525 Pfam Squalene epoxidase 210 482 IPR013698 GO:0004506|GO:0016021|GO:0050660
Car04g03350 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 60 82 - -
Car04g03350 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 209 224 - -
Car04g03350 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 337 352 - -
Car04g03350 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 352 368 - -
Car04g03350 525 PANTHER SQUALENE MONOOXYGENASE 1 524 IPR040125 GO:0004506|GO:0016126
Car04g03350 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 524 - -
Car04g03350 525 Gene3D - 47 413 IPR036188 -
Car04g03350 525 Pfam NAD(P)-binding Rossmann-like domain 63 89 - -
Car04g03350 525 SUPERFAMILY FAD/NAD(P)-binding domain 59 433 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03350 Car-Chr4 61979564 61983733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03350 1 525 Miscellaneous Gene Families AT1G58440 74.906 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03350 K00511 - gmx:100804406 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03350 04 61979564 61983733 Car04g03350 04 61979564 61983733 ECH
Car04g03350 04 61979564 61983733 Car05g02815 05 73219399 73225554 PCT