Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03197 ATGTCTTTCTTTTCCACTCTCAGAAGATCCATCTCACCCCTCACCCAACATTTTCCAATCCAACGGTTCCAGATCCCTCACTCCTCCTGCCGTTCTTCGCCGTCGATACTCAACTATCGGAAAGGTTTTTTTGCCGCCATCGTCGCTGGCACGAGTCTAGGGTTTCTTCTCTACACTGACTTTGACTCAAATCTCTTTCAAAGTTCAATCTCTTCATTCGTTGACTTGTCAACACCGAATTCTTCTGACAACCAAAAACGACGTCGTTTTTCACCTTCATCGTTCTTTACCAAATTCTCCCTTCCAGAAACTTCTGGTACCTTTTCTTTTCGAGATACGTACAGGAGAAAGGTTTTCTTCAATTATGAGAAGCGCATACGGTTGCGAAGTCCTCCCGAAAAGGTGTTTGAATACTTTGCATCTCATCGTACACCAGAAGGAGAAGTACTCATGGTACCAGAAGATCTAATGAGGGCAGTAGTTCCTGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGGTGGATATTTTAGAGGAGAAAGAAGCCCTGGCCATTTACGCTGCTCTCCTTCAGATTTTTTTATGCTCTTTGATGTAAACGGTGATGGACATATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCAGAATCAAGCTTTTCTGTGGCATTTAAAATGTTTGACGTGGACAATAATGGGGAAATAACTCGGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAACACAGGGATGGACTGCGAACTGGTCTAAAAGTGAACGATTCTGTGGAAAATGGAGGGCTGTTGGAATACTTTTTTGGTAAAGACGGAAAGGGTTGCCTCCAACTTGATAAATTCGTACAATTTATGAGAGACTTGCATGATGAAGTTTTGAGGCTGGAGTTTGATCATTATGACTACAAATCTCGAAAATCAATTTCAGCCAAGGACTTTGCACTTTCCATGGTTGCTTCTGCCGACATTAGTCATCTAGGCAAGTTGCTTGAACGGGTTGATGAATTAAACAATGATTCACGCTTTAAGGATGTACAAATCACATTTGAGGACTTCAAAAACTTTGCGGAGCTACGGAAGAAGTTATTTCCATTATCATTAGCCCTTTTCAGTTTTGGAAAAGTAAATGGCCTGTTGACTAGAGATGATTTTCAGCGAGCAGCATCACATGTGTGCGGCTTATCTCTCTCTGACAATGTGGTTGAGATTGTTTTTCATTTGTTTGATACAAATCAAGACGGAAACCTAAGTACAAATGAGTTTGTTAGAGTGCTACACAAGCGAGAAAAAGACATTGTACAACCTGTGGAGTCAGGGATGTTGGCTACCCAGCCACGAatcaaatcatcttctcatatcatatcatatcatatTTATTACAAATATAATTTTATTATATCGATGGGGAAACCAGCAGGGAAAAAGAGGGATCATGAATCACCAAAATCAACGACCCCGACCAACAAAAAGGGTTACGAGCGTTCTTCATCATCAAAAGCCTTAGATGACGACACAGCAATGTTCATCAACATGTCACAAGAGCTCAAAGAAGAAGGTAATAAACTTTTCTTCCAAAAAAAAGACCATGAAGGCGCTATGTTAAAGTACGAAAAAGCCCTCAAACTCCTCCCCAAAAACCACATCGATGTTGCACACCTTCACACAAACATGGCCATGTGTTATATGCAATTGGGCCTTGGCGAGTTCCCTCGCGCAATTAACGAGTGCAATCTTGCTTTGCAAGTTTCGCCTCGGACTGTGAAGTTGATATATGGAGAGGATATAAGGTGGGCGCAATTGCCTGTGAATTGTAGTATGAAGATGGTGAGGGATGTCATAAGGGAAAGGTTTCCCGGGTTAAAAGGTGTTCTTGTTAAGTATAAGGACAGGGAAGGTGATTTGGTTACTATTACTACTACTTCTGAATTGAGGCTAGCTGAGGGTTGTCATGTGCTTGGCTCGATTCGGTTATATATTACGCAGGTGGATTTGGATCAGGAGCCGTGTTATGATGAAAAGACGAGTAGTGGTAATGCTGGTGAGAATGGGATTGCAGATGGAGACAGGGGTGTTGTGGCTAATAGGATGATTACTGTTGAAGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATTCATATTTGGATATTCATGAGGTTGGGATGAAGCTGTATTCGGAGGCGATGGAGGATGCAGTGACAAATGATGGTGCTCAAGAGCTGTTTGATATTGCTGCAGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCAAAGGCGAGGAGGCGAGTGTCTATTCCAGAAGACGGGCCGAGAGAAGCGTCTTTTGAGCATATTAAGGTTGCATATGAGTGGGCTAAGAAGGAGTACAAGGAATCAGAATTGAGATATGAAGAATCTGTGAAAATAAAACCGGACTTTTATGAGGGACTCCTTGCTCTTGGGTTTCAGCAATTTGAGGAAGCAAAGCTGTGCTGGGGTTATTTAATTGCAAACAATAAGAAATTTGAAGTTGGTCCTTTCGAAGAGGTTCTACAGCTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGGATGTTGATGTGGGAGGAGATTGAAGAGCAGCGTTTGAATGGACTATCTAAATTGGATAAATATAATGCACAGTTAGAGAAAATGGGTTTGCATGGTCTTTTCAGGGACGTTTCTTCTGATGAAGCCGATGAAAAGGCTTCAAAGATGAGGATACAGATATATCTTTTATGGGGTACCTTATTGTATGAGCGTTCTGTTGTGGAATTTAAGCTAGGACTACCGACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTGGCTGGAGCTTCTACTACCGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAAACTGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCATGGAATGAGATAGGCAAAATTAGTGCTTCTATATTCTTCCTTAATATTTTTGAAGGCTTCTACATTCCATTCCAAGACAGGGATTTTTTCTTCATTTTTTTCAACTCCATGATGGGTGCTAGGATTGAATTATTTTTTCCGATGTCAGTTTTGTACGAGGTTGGGATATTTGGGCCATAA 3216 0.4095 MSFFSTLRRSISPLTQHFPIQRFQIPHSSCRSSPSILNYRKGFFAAIVAGTSLGFLLYTDFDSNLFQSSISSFVDLSTPNSSDNQKRRRFSPSSFFTKFSLPETSGTFSFRDTYRRKVFFNYEKRIRLRSPPEKVFEYFASHRTPEGEVLMVPEDLMRAVVPVFPPSESHLVRGGYFRGERSPGHLRCSPSDFFMLFDVNGDGHISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEITREEFKKVMALMRSHHRQGVQHRDGLRTGLKVNDSVENGGLLEYFFGKDGKGCLQLDKFVQFMRDLHDEVLRLEFDHYDYKSRKSISAKDFALSMVASADISHLGKLLERVDELNNDSRFKDVQITFEDFKNFAELRKKLFPLSLALFSFGKVNGLLTRDDFQRAASHVCGLSLSDNVVEIVFHLFDTNQDGNLSTNEFVRVLHKREKDIVQPVESGMLATQPRIKSSSHIISYHIYYKYNFIISMGKPAGKKRDHESPKSTTPTNKKGYERSSSSKALDDDTAMFINMSQELKEEGNKLFFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEFPRAINECNLALQVSPRTVKLIYGEDIRWAQLPVNCSMKMVRDVIRERFPGLKGVLVKYKDREGDLVTITTTSELRLAEGCHVLGSIRLYITQVDLDQEPCYDEKTSSGNAGENGIADGDRGVVANRMITVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSEAMEDAVTNDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRRVSIPEDGPREASFEHIKVAYEWAKKEYKESELRYEESVKIKPDFYEGLLALGFQQFEEAKLCWGYLIANNKKFEVGPFEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAQLEKMGLHGLFRDVSSDEADEKASKMRIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEIGKISASIFFLNIFEGFYIPFQDRDFFFIFFNSMMGARIELFFPMSVLYEVGIFGP 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03197 1071 PANTHER PROTEIN PHOX4 602 1019 - -
Car04g03197 1071 PANTHER PROTEIN PHOX4 485 602 - -
Car04g03197 1071 ProSiteProfiles PB1 domain profile. 601 679 IPR000270 GO:0005515
Car04g03197 1071 ProSiteProfiles EF-hand calcium-binding domain profile. 219 254 IPR002048 GO:0005509
Car04g03197 1071 SUPERFAMILY EF-hand 193 302 IPR011992 -
Car04g03197 1071 CDD PB1 603 676 - -
Car04g03197 1071 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Car04g03197 1071 PANTHER PROTEIN CLMP1 602 1019 IPR044517 -
Car04g03197 1071 PANTHER PROTEIN CLMP1 485 602 IPR044517 -
Car04g03197 1071 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Car04g03197 1071 MobiDBLite consensus disorder prediction 489 516 - -
Car04g03197 1071 SMART efh_1 223 251 IPR002048 GO:0005509
Car04g03197 1071 SMART efh_1 189 217 IPR002048 GO:0005509
Car04g03197 1071 SMART efh_1 417 445 IPR002048 GO:0005509
Car04g03197 1071 Pfam EF hand 227 250 IPR002048 GO:0005509
Car04g03197 1071 SUPERFAMILY TPR-like 529 883 IPR011990 GO:0005515
Car04g03197 1071 Gene3D - 281 383 - -
Car04g03197 1071 Gene3D - 607 678 - -
Car04g03197 1071 CDD EFh 194 249 IPR002048 GO:0005509
Car04g03197 1071 Pfam EF-hand domain pair 394 443 IPR002048 GO:0005509
Car04g03197 1071 SMART PB1_new 601 679 IPR000270 GO:0005515
Car04g03197 1071 Gene3D Tetratricopeptide repeat domain 522 606 IPR011990 GO:0005515
Car04g03197 1071 SUPERFAMILY EF-hand 310 444 IPR011992 -
Car04g03197 1071 Gene3D - 392 453 - -
Car04g03197 1071 Pfam PB1 domain 602 677 IPR000270 GO:0005515
Car04g03197 1071 Gene3D - 167 256 - -
Car04g03197 1071 SUPERFAMILY CAD & PB1 domains 599 688 - -
Car04g03197 1071 CDD EFh_MICU 224 445 - -
Car04g03197 1071 ProSitePatterns EF-hand calcium-binding domain. 232 244 IPR018247 -
Car04g03197 1071 Pfam EF hand 192 210 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03197 Car-Chr4 60323878 60334153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03197 43 410 EF-hand Containing Proteins AT4G32060 66.220 4.36e-159 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03197 - K22827 cam:101499892 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03197 04 60323878 60334153 Car05g02934 05 74340834 74343491 PCT