Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03124 ATGAGCAGAGCAACGACTCGAAGTAAAAACAAAAGACAGAGACATGCGGATGATGATGCCGGAACATCGGAAATATGGAGGAGAATTCACAAAACAGGTGCGGTAACTGAAGATGATGTGAACCAACTGTATATGATTTGGAAGCCCGTCTGTTCAGGCTGTCGTGTTAATATTAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCGGCTCCAAGTGGTACACGGAAGTCTGGTATATGGCAGAAGATATCTGATTTTGTTGAAAGTCTTGGCTTTGACCCAAACACAGAACTTCGCGCATCTGCTGATTCACCCGCAGGACTCACAAATCTTGGAGCAACGTGTTATGCTAATAGCATACTCCAATGCTTGTATATGAATAAACATTTCCGAGAAGGATTGTTTTCTGTTGAACCGGATGTTTTACAGCAACAACCGGTGTTAGATCAACTGGCTCGGCTTTTTGCACAGTTGCATTTAAGTAAAAAGGCTTTCATAGATTCTTCTCCATTTGCAAGAACGATTGTTCAAGATCTTTTCCGTGGAAGTGTGTCTCATGTGACAACGTGTTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGTTTAGATGATTACCTCACTGTTGAAGAGCTTAATGGGGACAATCAATATTTTTGTGAGTCGTGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTACGAACATTACCTGACGTGCTGAATTTTCAGCTTAAACGCTATGTCTTCCTTCCAAAGACAACAACAAAGAAGAAAGTTACTTCTACATTTTCATTTCGTGCTGAACTTAGCATGCACCACAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTACTGATACACAAGGGAACTGCAGCTAATAGTGGTCATTACATTGCTCACATCAAGGATAAGAAAACTGGGCAATGGTGGGAATTTGATGATGAGCTTGTTACTAACTTGGGTCGGTGTCCATTTGCTGATGAAGCTTCATGCTCTGCTTCTAAATCTGTTAAGAATGACGTAGATCATGCTAATTCCTCTGAAGCAAGGGTAGCTGGCAGTAATGGAAATGGTTTAAATGTCAAAGTTTCACAATCTTCACTTACAGAGACGTTTTCATCTAGTGATGCATATATGTTGATGTACCATCTTAAGCATACTAAAAATGTTAGTGAGAATGGGGTCATGGATTCTAGTGCTAACCATACAGAAAGAGATGATAATTCAGTTACTGCACAAGACAGTGATTGTCTTCCTTCTCATTTTTGTGAAGAGATTCAAAATTTCAATGCCTCATATCTTGATGCTTGCCAGCAGTACACTCACAGGAAAGAGGAAGAATTGAGTCGTATCAATGAGAGGAGAGAAGAAGTTCGATCTGTTTTAGCTGAAGCTACTGTTCAACCACTTGAGCAACCATTTTTTTGGATTAATAGTGACTGGCTTCGCCAGTGGGCTGAAAATGTTACTCCAACTGCTATTGACAACACATCTATCCAATGTTCACATGGTAAAGTCCCAGTGTCAAAGGTTACCTCGACAAAGCGATTGTCTTCTAAAGCATGGGATAAACTATTGTCTAAGTATGGCGGGGGGCCAGCACTTTCTCATGTTGACCACTGTTGGGATTGTCTGATTGATGGGGCTCGAAATGTTGTGTCAGCTGACACTTATCGGGATCGAAGAGAATCATTTAAGCAACTTGCACGAGATGTTCTTGATGGGAAAAATGAAGATGGAAAGTACTATGTGTCTAGATCATGGTTGCAGCAATGGTGGAAAAGAAAAGTTGTTGATGCTCCATCTGAAGCTGATGCTGGACCGACAGCGGCTATTAGTTGTCCACATGGACAACTTTTGCCTGAGCAAGCAACTGGTGCTAAGCGGGTGCTTGTTTCTGAGGATTTTTGGCTCTTCTTATATGAAGACGCCACTTCTGTAAAACATGATGATCTTCTGGTCTGCCCTACTTTTCCTTTAGACTCCGGAGAGTGTTCTGAATGCAGCAATGAATTATCTGAAGTGGCTTGCATGGAGGATTCTATGAGGTTATTAAAACAAAGGCAGCGTCAGAGTCACGAGAAACTGTTCAGTGGGAAAAGTATGCCACTCTCTCTAGATTGCAAGTATTTCTTAGTTCCTTCGTCTTGGATTTCAAAATGGAGAAATTACATCAACTCAGCCGTCAAGAATTCTGATAAACCTGAAACGTTAGATGTGGTAATTGGTTCACTGATCTGTGAAAAGCACTCAAAACTAGTTGAAAGGCCTCCTGAACTGATTTCCAGACGTGGTGCTATAATTCCAAAAGAGTCTTCTGTAAGTGGCTTAACTATCATATCTGAGAATGATTGGAAATGTTTCTGCAAAGAATGGGGTGCTACTGAGACCAAAGGAATATCTGCAAAGATTGAGAATATTAATGATTCAGTGAATGCTCTAGCTGGATCTTGTGAAGAGATGGCAATATGTGAGGACCAGTTGGCCAATTGGGATAAGGTGAATAATGAAAGTGGGAATGGTCAAATTTTGATCAAGACTTTTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGTTGTGCGTTGATGCATAAACTAAATTATTGCAATGAGGATATATGTGTAATTCTTGTCCGTGGAAAGGAGGTCCCTAGATCGATCTTGGAGGCTTCAAAGGGATTTGTTGAAACAGATCGAAGGGTTTCTAAACGCTCCCGGAAGACTAAAAATGGGAGTTCAATTAATCTAAAAGTTTCTGCTTCAACATCAATTTACCAACTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAAATACTACAAAAAGGTGATAGAACAATTGATAACAATGACGAAAATGCTACACTTGTGGACGTTGACATATTTGCAGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTGTGTAACGATAAAATGGATACACAGCATACCGAGGAAGGGTTTCGTGGAACACTTTTGACTTCAAATATTTCATCTCAGGTTGTTTAG 3144 0.4046 MSRATTRSKNKRQRHADDDAGTSEIWRRIHKTGAVTEDDVNQLYMIWKPVCSGCRVNIKDNPNCFCALVPAPSGTRKSGIWQKISDFVESLGFDPNTELRASADSPAGLTNLGATCYANSILQCLYMNKHFREGLFSVEPDVLQQQPVLDQLARLFAQLHLSKKAFIDSSPFARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKVTSTFSFRAELSMHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDKKTGQWWEFDDELVTNLGRCPFADEASCSASKSVKNDVDHANSSEARVAGSNGNGLNVKVSQSSLTETFSSSDAYMLMYHLKHTKNVSENGVMDSSANHTERDDNSVTAQDSDCLPSHFCEEIQNFNASYLDACQQYTHRKEEELSRINERREEVRSVLAEATVQPLEQPFFWINSDWLRQWAENVTPTAIDNTSIQCSHGKVPVSKVTSTKRLSSKAWDKLLSKYGGGPALSHVDHCWDCLIDGARNVVSADTYRDRRESFKQLARDVLDGKNEDGKYYVSRSWLQQWWKRKVVDAPSEADAGPTAAISCPHGQLLPEQATGAKRVLVSEDFWLFLYEDATSVKHDDLLVCPTFPLDSGECSECSNELSEVACMEDSMRLLKQRQRQSHEKLFSGKSMPLSLDCKYFLVPSSWISKWRNYINSAVKNSDKPETLDVVIGSLICEKHSKLVERPPELISRRGAIIPKESSVSGLTIISENDWKCFCKEWGATETKGISAKIENINDSVNALAGSCEEMAICEDQLANWDKVNNESGNGQILIKTFPEVCESCIGEKESCALMHKLNYCNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKTKNGSSINLKVSASTSIYQLKMMIWESFGVVKENQILQKGDRTIDNNDENATLVDVDIFAGDQIIVRDSEIHENRDIADELCNDKMDTQHTEEGFRGTLLTSNISSQVV 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03124 1047 Gene3D - 708 833 IPR035927 -
Car04g03124 1047 Gene3D - 469 569 IPR035927 -
Car04g03124 1047 SUPERFAMILY Ubiquitin-like 938 1008 IPR029071 -
Car04g03124 1047 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 175 - -
Car04g03124 1047 Gene3D - 936 1007 - -
Car04g03124 1047 SUPERFAMILY DUSP-like 482 570 IPR035927 -
Car04g03124 1047 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 414 IPR028889 -
Car04g03124 1047 CDD Ubl_USP48 937 1040 IPR044743 GO:0004197|GO:0004843|GO:0016579
Car04g03124 1047 Gene3D Cysteine proteinases 92 174 - -
Car04g03124 1047 ProSiteProfiles DUSP domain profile. 585 687 IPR006615 GO:0004843
Car04g03124 1047 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 173 1017 - -
Car04g03124 1047 Coils Coil 477 497 - -
Car04g03124 1047 Pfam Ubiquitin carboxyl-terminal hydrolase 108 160 IPR001394 GO:0004843|GO:0016579
Car04g03124 1047 SMART dusp 496 567 IPR006615 GO:0004843
Car04g03124 1047 Pfam Ubiquitin carboxyl-terminal hydrolase 162 411 IPR001394 GO:0004843|GO:0016579
Car04g03124 1047 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 308 326 IPR018200 GO:0004843|GO:0006511
Car04g03124 1047 SUPERFAMILY Cysteine proteinases 106 419 IPR038765 -
Car04g03124 1047 ProSiteProfiles DUSP domain profile. 713 833 IPR006615 GO:0004843
Car04g03124 1047 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Car04g03124 1047 Gene3D Cysteine proteinases 175 423 - -
Car04g03124 1047 ProSiteProfiles DUSP domain profile. 478 570 IPR006615 GO:0004843
Car04g03124 1047 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 173 1017 - -
Car04g03124 1047 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 175 - -
Car04g03124 1047 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03124 Car-Chr4 59350938 59358927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03124 86 343 Miscellaneous Gene Families AT4G31670 27.070 2.79e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03124 - - gmx:100795556 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03124 04 59350938 59358927 Car04g03124 04 59350938 59358927 ECH
Car04g03124 04 59350938 59358927 Car05g03026 05 75113438 75123120 PCT