Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02336 ATGTGGGCACTTCGTCGAACTTCATTTCGTCTCACCCCAAGAAGCCAAGGGCTTTATAATGTTGGAACTTCTCGTGTCAAATTAATGCCAAATACTTTGGTGGAATATGAAGATGCGGCTCCTAATTATCATCAAATGAAACATGATAGATTTCTGTCATCGGGCCACACATTTTACCGCACAGGTCATGCTTCTCAGAAATTTACTGTGAGCAAGCGTGAACTTTCGTCACAAGCTGATGCTAGTAGCACAAAAGATgatgatgatgagctggagAGTAGAAACAGGAGATCAGAACTATTCAAGGCTGTTGTAAATCTTCCCGTTGATTCTGCGCTGAACAAGTGGGTTGAAAAAGGTAAAGAATTAAGCAGGCAAGATATCACATTTGCCTTGATTAATCTTCGAAAGCAGAAAATGCATGGAAAGGCTTTGCAGGTCCTTGAGTGGCTAGAGTCAAAGAAAAAGCTTGAATTTACTGAGAAAGAATATGCTTCTAAACTTGATTTGATTGCCAAATTACATGGCCTACGAAAGGCAGAAAATTTCATCAACTGCGTTCCAAATTCTTTCAGAGGAGAATTATTATACAGAACATTACTAGCTAACTCTGCTAGTCTGAACAATTTGAGGAAAACTGAGGAAATATTCAACAAAATGAGGGAGTTAAATCTTCCGGTTACAGCCTTTGCTTGTAAGCAGTTGCTTCTTATTTATAAAAAGACTCACAAGAAGAAAATAGCTGAGGTGTTACTTATGATGGAAAAGGAGAATATCAAACCTTCTCCTTTTACTTATAAAATTTTAATAGACGTGAAGGGCCTATCCAATGACATTGATGGAATGGATCAAATAGTTGAGACAATGAAGGCAGAAGGTGTTAAACTAGACCATCAAACACAGGCATCCTTGGCTAGGCATTATGCCTCAGCTGGGCTTACAGAAAAAACTGATGCTATATTGAAGGATATTGAAGGTGAAAACTTGAAAGAGAATATGTGGGTAATCCCAACTTTGCTCCGCCTTTATGCAATTCTGGGAAGGGTCGACGAAGTGGAGAGAATTTGGAAGGTTTGTGAGTCAAGGCCTCCTCGGATAGAGGATTGCCTTGCTGCTGTTGAAGCTTGGGGAAAGTTAAACAAAATTGAAGAAGCAGAGGCAGTTTTTGAGATTATGTCAAATAAATGGAAGCTTTCCGCTAAGAACTACTCAATACTCCTCAACATTTATGCAAGGCATAAGTTGGTAAACAAGGGCAAGGATCTTATTAAGAAAATGGGAGATAGTGGATGCATAATAGGTCCATTGACCTGGGATGCTCTTGTGTCACTTTATATTCATGCAGGGGAAATTGAGAAGGCAGACTCTGTTTTGCAGAAGGCAATGCAGCAGAATAAGATGAAGCCATTATTTACTACTTATATGACTATTATGGAGCAGTATGCAAAGAGGGGTGATGTCCATAATACAGAGAAGATTTTCTATAGATTGAGACAATCTGGTTATGTTTCTAGAATATCTCCTTTCCATGCTCTAACACAGGCTTATTTAAACGCCAAACTACCGGCATATGGAATCAGGGAGAGGATGAAAGCTGATGATCTATTTCCCAACAAAGCTTTGGCTGAACAGTTGGCTCTATTAGATCCATTTAAGAAAACTCCTGTTTCAGTTTTGCTTGATTGA 1686 0.3861 MWALRRTSFRLTPRSQGLYNVGTSRVKLMPNTLVEYEDAAPNYHQMKHDRFLSSGHTFYRTGHASQKFTVSKRELSSQADASSTKDDDDELESRNRRSELFKAVVNLPVDSALNKWVEKGKELSRQDITFALINLRKQKMHGKALQVLEWLESKKKLEFTEKEYASKLDLIAKLHGLRKAENFINCVPNSFRGELLYRTLLANSASLNNLRKTEEIFNKMRELNLPVTAFACKQLLLIYKKTHKKKIAEVLLMMEKENIKPSPFTYKILIDVKGLSNDIDGMDQIVETMKAEGVKLDHQTQASLARHYASAGLTEKTDAILKDIEGENLKENMWVIPTLLRLYAILGRVDEVERIWKVCESRPPRIEDCLAAVEAWGKLNKIEEAEAVFEIMSNKWKLSAKNYSILLNIYARHKLVNKGKDLIKKMGDSGCIIGPLTWDALVSLYIHAGEIEKADSVLQKAMQQNKMKPLFTTYMTIMEQYAKRGDVHNTEKIFYRLRQSGYVSRISPFHALTQAYLNAKLPAYGIRERMKADDLFPNKALAEQLALLDPFKKTPVSVLLD 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02336 561 MobiDBLite consensus disorder prediction 69 93 - -
Car04g02336 561 MobiDBLite consensus disorder prediction 79 93 - -
Car04g02336 561 Gene3D Tetratricopeptide repeat domain 370 554 IPR011990 GO:0005515
Car04g02336 561 Gene3D Tetratricopeptide repeat domain 128 369 IPR011990 GO:0005515
Car04g02336 561 TIGRFAM PPR: pentatricopeptide repeat domain 403 432 IPR002885 -
Car04g02336 561 PANTHER OS12G0527900 PROTEIN 20 90 - -
Car04g02336 561 PANTHER OS12G0527900 PROTEIN 96 561 - -
Car04g02336 561 PANTHER DNA-BINDING PROTEIN 96 561 - -
Car04g02336 561 PANTHER DNA-BINDING PROTEIN 20 90 - -
Car04g02336 561 Pfam Pentatricopeptide repeat domain 216 273 IPR002885 -
Car04g02336 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 469 IPR002885 -
Car04g02336 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Car04g02336 561 Pfam PPR repeat 473 501 IPR002885 -
Car04g02336 561 Pfam PPR repeat 403 431 IPR002885 -
Car04g02336 561 Pfam PPR repeat 437 460 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02336 Car-Chr4 37147495 37154287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02336 107 501 EF-hand Containing Proteins AT1G02150 24.510 6.24e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02336 - - mtr:MTR_1g050750 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02336 04 37147495 37154287 Car04g00885 04 8664631 8667078 ECH
Car04g02336 04 37147495 37154287 Car04g02336 04 37147495 37154287 ECH