Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02239 ATGGCCCTACAAAAATATCTCTCATTCATTACAATCATGATTTGTTTTGTTGTTTGTTATAGTAGTACCTTGCAAGAGGACCCACTTAGTTTAATTGTTGAGGATTCGCCTTATATTAACGATGGGACATTTATCAAGCAAAGCAAAGATCATGTTTTGGGCTTAAGGAGGTTTGACAAGTCGGGTGAAATTTCTCTTAATTCATTTAAAACTTTTAATGTTGATGATTTTGGAGCTCAAGGAGATGGTAAAAATGATGACACACAGGCATTCAATAAGGTTTGGGAAGCAGCATGTTCTTGGAAGGGAACAGCTATTGTGTTGGCTCAAAAGAATTACCTTCTTAAGCCAATCACATTTTCTGGTCCATGTAAATCTAACATAGAAGTTCAGATCTCTGGAACCCTTGACGCATCAAATAATCCATCTGATTACAATGAAGACCCCACACACTGGCTTATGTTTGATAGTATTCAGAAACTAACTGTTAAAGGTGGTGGAACTATTAATGGAAATGGAAATATATGGTGGCAGAACTCGTGCAAAAAGAACAAAAAGCTTCCTTGCAAGAATGCCCCTACGGCGCTGACATTTTACAAGTGCAACAATTTGGTAGTTAAGGACTTGACTATAAAAGATGGGCAACAGATTCATTTTACAATTCAAGATTCTAGCAATGTTATAGTTTCTGGTCTCACCGTGACAGCGCCAGAGGACAGTCCAAACACAGATGGAATTCATGTCACAAATACTCAAAACATTCGAATCTCAAGCTCCACCATAGGAACTGGAGATGATTGTATATCAATTGTAGATGGATCAAAGAATCTAAAAGCTACAGACATAACCTGTGGACCAGGCCATGGTATCAGTATTGGAAGCTTAGGGGAAGGGGGTTCCAAGGAATTTGTTTCAGGAATAACGGTTAATGGAGCTAAATTTTCTGGAACTACCAATGGAGTAAGAATTAAGACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAAATTTCATAATATTCAAATGGATAATGTGACCAACCCCATAATTATTGATCAGAATTATTGTGATCAACAGACTCCATGCCAAAAACAGAAATCAGCTGTTCAGATAAGGAATGTGTTGTACCAGAACATCAAAGGCACAAGTGCTTCTGATGTGGCAATGCAATTTGATTGCAGCCAGAACTTTCCATGTCAGGGGATAGTATTGCAAAACATAAACCTGCAACTTGAAGGTGGAGGAGAGGCCAAAGCTTCATGCAACAATGTTAAATTGTCCTACAGAGGAAATGTTAGTCCTCGTTGTAGTTACATTGAGGAAATGCATGAAATTGGCTCGAACAGATTTATAGTATGA 1362 0.3847 MALQKYLSFITIMICFVVCYSSTLQEDPLSLIVEDSPYINDGTFIKQSKDHVLGLRRFDKSGEISLNSFKTFNVDDFGAQGDGKNDDTQAFNKVWEAACSWKGTAIVLAQKNYLLKPITFSGPCKSNIEVQISGTLDASNNPSDYNEDPTHWLMFDSIQKLTVKGGGTINGNGNIWWQNSCKKNKKLPCKNAPTALTFYKCNNLVVKDLTIKDGQQIHFTIQDSSNVIVSGLTVTAPEDSPNTDGIHVTNTQNIRISSSTIGTGDDCISIVDGSKNLKATDITCGPGHGISIGSLGEGGSKEFVSGITVNGAKFSGTTNGVRIKTWQGGSGSASNIKFHNIQMDNVTNPIIIDQNYCDQQTPCQKQKSAVQIRNVLYQNIKGTSASDVAMQFDCSQNFPCQGIVLQNINLQLEGGGEAKASCNNVKLSYRGNVSPRCSYIEEMHEIGSNRFIV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02239 453 Pfam Glycosyl hydrolases family 28 106 426 IPR000743 GO:0004650|GO:0005975
Car04g02239 453 SUPERFAMILY Pectin lyase-like 69 439 IPR011050 -
Car04g02239 453 PANTHER - 5 442 - -
Car04g02239 453 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Car04g02239 453 Gene3D - 63 446 IPR012334 -
Car04g02239 453 PANTHER ENDO POLYGALACTURONASE 5 442 - -
Car04g02239 453 SMART pbh1 333 354 IPR006626 -
Car04g02239 453 SMART pbh1 304 325 IPR006626 -
Car04g02239 453 SMART pbh1 224 250 IPR006626 -
Car04g02239 453 SMART pbh1 251 272 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02239 Car-Chr4 32303554 32306708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02239 3 437 Glycoside Hydrolase AT2G41850 54.422 2.14e-155 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02239 K01184 - gmx:100816917 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02239 04 32303554 32306708 Car03g02114 03 67373667 67377134 PCT