Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02114 ATGGCCCTCTCCCCAATACATTTCCTACTCTCATTCACCATCATCATTTCATTTGTTGCTTGTTATAGCAACTTGCAAGAGGCCCCACTTATTAATACATATGTTGATCATTCACCTTCCATTGATGATGGTGATACACTATTATTTTTTAAAAACATGATTAACCAAAACACAAATGTTTTTGGTGGCACTCAAATTGTTAATGTCAATGATTATGGAGCTAAAGGGAATGGTTGTACTGATGACACACAGGCATTTAAGAAGGCTTGGGAAATAGTATGTTCTTCAACGGAAGCAGTTTTTTTGGTGCCTCTTGATAATTATTATCTACTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTAACATAACAGTTCAGTTATCTGGAAGTCTTGAAGCATCAGAGGAACCATCAGATTACAGTGAAGATCAAAGACATTGGCTTGTATTTGATAATGTTCAAAATCTAATAATTAATGGTGGTGGAACCATTAATGGAAAAGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGCGATCTTGCAAGGATGCCCCAACGGCTCTAACATTTGATAGTTGTGAGAACTTGATAGTTGAGAACTTGAGTATAGAAAATGCGCAACAAATCCACGTGTCATTCCAGGATTCCATGAATGTTAAAGCTTTTGGTCTCAATGTGTCATCACCAGAAGATAGTCCTAACACTGATGGGATTCATGTCACCAATACCCAAAACATCCAAATCTCTAACTCTCTTATAGGAACTGGTGACGATTGTATATCAATTGTACATGGATCTAGGAACGTAGAAGCCACAAACATAACTTGTGGGCCCGGCCATGGTATTAGTATTGGAAGCTTGGGGGCTGGAAAATCCAAGGAATTTGTTTCTGAAGTAATAGTGAATGGAGCTAAGATTTCTGGAACTAAAAATGGAGTTAGAATTAAGACGTGGCCGGGAGGTTCAGGAAGTGCTACCAACATCAAATTTCTGAACATTGAAATGGACAATGTGACCAACCCCATAATAATAGACCAAAATTACTGTGACAAGAAAAAAAAGCCATGCAAAAAAAAGAGTGATTCTGCAGTTCAAATTAGTAACGTGTTGTACCAGAATATTATTGGTAAAAGTGCTTCTGATGTTGCTGTGAAGTTTGATTGCAGCAAGAAATTTCCATGCAATAAGATAGTATTGCAAAACATAGATTTGCAATGTGAAGAAGGAGAAGCTGCCAGTGCTTTATGCAACAATGTTGAATTGTCTTACATAGGACATGTTACTCCTCTCTGTGCTAGTTACTCCTAG 1320 0.375 MALSPIHFLLSFTIIISFVACYSNLQEAPLINTYVDHSPSIDDGDTLLFFKNMINQNTNVFGGTQIVNVNDYGAKGNGCTDDTQAFKKAWEIVCSSTEAVFLVPLDNYYLLKPIRFSGPCKSNITVQLSGSLEASEEPSDYSEDQRHWLVFDNVQNLIINGGGTINGKGNIWWQNSCKRNKKRSCKDAPTALTFDSCENLIVENLSIENAQQIHVSFQDSMNVKAFGLNVSSPEDSPNTDGIHVTNTQNIQISNSLIGTGDDCISIVHGSRNVEATNITCGPGHGISIGSLGAGKSKEFVSEVIVNGAKISGTKNGVRIKTWPGGSGSATNIKFLNIEMDNVTNPIIIDQNYCDKKKKPCKKKSDSAVQISNVLYQNIIGKSASDVAVKFDCSKKFPCNKIVLQNIDLQCEEGEAASALCNNVELSYIGHVTPLCASYS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02114 439 PANTHER ENDO POLYGALACTURONASE 8 437 - -
Car03g02114 439 Pfam Glycosyl hydrolases family 28 96 424 IPR000743 GO:0004650|GO:0005975
Car03g02114 439 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
Car03g02114 439 Gene3D - 55 433 IPR012334 -
Car03g02114 439 PANTHER - 8 437 - -
Car03g02114 439 SMART pbh1 197 246 IPR006626 -
Car03g02114 439 SMART pbh1 247 268 IPR006626 -
Car03g02114 439 SMART pbh1 300 321 IPR006626 -
Car03g02114 439 SMART pbh1 329 350 IPR006626 -
Car03g02114 439 SUPERFAMILY Pectin lyase-like 64 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02114 Car-Chr3 67373667 67377134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02114 68 435 Glycoside Hydrolase AT3G07970 57.682 1.93e-143 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02114 K01184 - gmx:100797601 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02239 04 32303554 32306708 Car03g02114 03 67373667 67377134 PCT