Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01880 ATGGAATCTGCAAGGAGTATGTTTTCTTCGTCTCCATCGTTTCCTCCAAGAACTCACCATTGGAACACTCTTCCTTCATCTTCTTATACTTCTGTTCTGATGCTTCGGGAACAAGTTGCGCCTACAATCACCGCCTGGTCTACTAGTTTTTCAGCTCAGAATTTTCCTACTTCAGTTCTTTTACAAGAGCAGCGTGACGAGTATAGGCCTCTATTGCACATTTCTAAGGGAGACAAGACATGCCAGGCAACATTAAATACAACGCAGATGGATATGGTCTCGGTTCACGAAGAGAATAACACCAGCAATGTTGATCAGGTATCACATGACTTCAGGCAGCACCTTCATCTCTTGCCTCATTTAGAGAACTTATTAACTTCCTCACAAACAGGAGAAATCAATGCTTCTTCGAATCTACAGCGTGTTGTTGACTCAGACAGGCCAGCAGATAGTTTACAATGTAATGCAGTTTCTCTTCCTAGGAAAGCTTTTACTCCATCGAAAAAACAAGCAGCCTCGGTAGCCGAAGACTTGAAATCAGTTAAAGTTGACGAGGATGCTAACAATTCAGTTCCTTTTGGTCTAGCCTCTCCCGGTTTGGCCGAGCCTTCACTCGGAAGCAATAAAACTGTACGATCAACTCGGCTTAGAGAGAGACGAGCAAAGGAGAGAAAGGTATCAAAGTCAAAAGTTAAAGACAAAGAAACTCACCTTGCCGGAAAAGATGCAACACAGGAAAAGCTACAAATACAAAAAAAGACAAGTAAAGGATTAAATCAAAATGATCCCTTGAACTCGTTCTTGCAGAGTCCAGACTCGAAGCAACTTTTAACTCTTGAACAAGAGTCTAAGTTGATTGCTCAGATACAGGACCTATTGAGATTGGAAGAATTGAAGACCAGTCTTCAATCTCAATTTGGAAGGGAACCAACTATGGTTGAATGGGCTGAAGGGGCAGGACTAAACTGGCGGAAACTGAAGGCGCAGCTTCGTTCTGGTAACAGAAGCAGAGAAAAATTGATTCAAGCAAATTTACGCATGGTACACTATGTTGCTAAAAATTACCAAGGGCGTGGTCTCAGCCTTGAGGACTTATTACAGGAGGGAAGCACAGGTCTTTTGAAGAGTGTTAAAAAGTTTAAACCCCAAGCCGGGTCCCGATTTGGTAATTACGCATACTGGTGGATAAAACAAGCAATAAGGAAAGCCATATTTAATCATTCCAGGACAATCCGTCTGCCGGAGAAGGTATATGCCAAACTGAGCAAGGTATTGGAGGCGAAGAAATTGTACATGGAAGAGGGAAATCTTAACCCGACCAAAGAAGAATTAGCAAAAAGGGTAGGAATTTCAGCAGACAAGGTTGACAGTTTGCTGTTTGTTTCAAGAATTCCAATTTCTATGCAGAAAACTGTGTGGGCCGAGCATGATACAACTTTCCAGGAGATTACTGCAGACACCGCAATTGAGAGCACAGACATGAGTGTTGCAAAACAGCTTATGAGACGACATGTGCTCAACACCTTAAAAACCTTACGCCCTAAAGAAAGAAGGATAATTCGGCTAAGATTTGGTTTTGAGGATGGAGAAGAGAGATCTTTATCAGAAATTGCAGAAATATTTGGTTTGTCGAGGGAAAGGGTCCGTCAGTTGGAGAGCCGGGCACTCTACAAGCTCAAAAAGTCTCTTGTCTGTCAAGGACTCGATGCATACGCAGACTTGCTTATATAG 1731 0.4252 MESARSMFSSSPSFPPRTHHWNTLPSSSYTSVLMLREQVAPTITAWSTSFSAQNFPTSVLLQEQRDEYRPLLHISKGDKTCQATLNTTQMDMVSVHEENNTSNVDQVSHDFRQHLHLLPHLENLLTSSQTGEINASSNLQRVVDSDRPADSLQCNAVSLPRKAFTPSKKQAASVAEDLKSVKVDEDANNSVPFGLASPGLAEPSLGSNKTVRSTRLRERRAKERKVSKSKVKDKETHLAGKDATQEKLQIQKKTSKGLNQNDPLNSFLQSPDSKQLLTLEQESKLIAQIQDLLRLEELKTSLQSQFGREPTMVEWAEGAGLNWRKLKAQLRSGNRSREKLIQANLRMVHYVAKNYQGRGLSLEDLLQEGSTGLLKSVKKFKPQAGSRFGNYAYWWIKQAIRKAIFNHSRTIRLPEKVYAKLSKVLEAKKLYMEEGNLNPTKEELAKRVGISADKVDSLLFVSRIPISMQKTVWAEHDTTFQEITADTAIESTDMSVAKQLMRRHVLNTLKTLRPKERRIIRLRFGFEDGEERSLSEIAEIFGLSRERVRQLESRALYKLKKSLVCQGLDAYADLLI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01880 576 Gene3D - 495 574 IPR036388 -
Car04g01880 576 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 576 - -
Car04g01880 576 ProSitePatterns Sigma-70 factors family signature 2. 533 559 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 MobiDBLite consensus disorder prediction 194 247 - -
Car04g01880 576 Pfam Sigma-70 region 3 420 493 IPR007624 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 Pfam Sigma-70 region 2 340 409 IPR007627 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 413 486 IPR013324 -
Car04g01880 576 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 336 563 IPR014284 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 576 - -
Car04g01880 576 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 473 570 IPR013324 -
Car04g01880 576 Gene3D - 204 409 - -
Car04g01880 576 MobiDBLite consensus disorder prediction 228 247 - -
Car04g01880 576 Pfam Sigma-70, region 4 509 561 IPR007630 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 MobiDBLite consensus disorder prediction 1 21 - -
Car04g01880 576 CDD Sigma70_r4 502 560 - -
Car04g01880 576 Gene3D - 413 490 IPR036388 -
Car04g01880 576 PRINTS Major sigma-70 factor signature 364 377 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 PRINTS Major sigma-70 factor signature 388 396 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 PRINTS Major sigma-70 factor signature 512 524 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 PRINTS Major sigma-70 factor signature 533 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 PRINTS Major sigma-70 factor signature 548 559 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car04g01880 576 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 260 410 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01880 Car-Chr4 20341425 20346625 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01880 - - gmx:100306289 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01880 04 20341425 20346625 Car04g01880 04 20341425 20346625 ECH
Car04g01880 04 20341425 20346625 Car03g02488 03 70695140 70700025 PCT