Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02488 ATGTTTTCTCCCTCTACACCCTTCCCTTCTAGAATTCTTCATTCCCCTTCAGTTATGATGCCTCCTGACCAAGCTGCTCCTGCAGTTACTTCTTGGTCTTCTAGTTTTGCTGCTCAGTATTTTCCTACCTCAGTTCTTTTGCAAGAGCATCGCGATGAGTATAAGCCTCTACTTCATGTGTCTAAAGAAGACAAGACATCCCAGGCAACCATGAATACAAGGGTAATGGATGTGGCCTCAGTTCGGGAGAAAAACAACACTGGGGATGTTGATGAGTCGGTGCATAACTGTATGCGGCAGTTGCACCTTCGGTGTCATTTACAGAACTTATTGGCTTCTTCGGCGACAGAGGATTTTGGCACTTCTTCTTCAACTACGCAACCTGCTGATGGTTTCCAGTGGAATGCACTTTCTCTTGCTAAGCAAGCTCTGTCTGCCTCAAAACAAGCAGCTGCAGCGGCTGAAGAGTTGAAATTGATTGAGGTTGATGACAATAGTGATGATCCACTACCTCTGGGTCTGGCCTCCACAAGTTTAGCCCACTCTTCACTTGGAAAGAATAAAATTGTGAGGTCAACACGGCTTAAAGAAAGGCGATCTAAACAGAGAAAAGTGTCAAAGTCAAAAGTTCTTGATGAAGAAAAGTACCTAACCAGAAAGTTTGATGTACAGAGAAGGTTACGAATAGAGAAAAAGTTAAAAGAAGGGCTTGAGGGAAATGACCCCCTGCGCTTGTTCTTATGGGGCCCTGAAACAAAGCGACTTTTGAACCTTGAAGAAGAGTCTAAATTGATTGCTCAGATACAGGATTTACTTAGATTGAAAGAAACAAACATCAAGCTTCAGTCTCAGTTTGGGAGGGAACCAACTTTGGCTGAATGGGCAGATGGCGTGGGCCTTAGCTGTCGTGCCCTTCAGGCACGGCTTCATTGTGGTAACAGAAGCAAAGATAAGCTGATTAATGCCAACTTACGCCTGGTAGTTCACATAGCTAAATATTATCAGGGGCGTGGTCTCAGTCTTCAGGACTTATTGCAGGAGGGAAGTATGGGTCTTATGAGGGGTGTTGAAAAGTTCAAACCCAAAGCTGGTTGCCGGTTCAGTACTTATGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTGCATTCCAAAACAATCCGTCTACCGGAGAATTTCTACACCCTTTTGGGCAAGGTTACGGAAGCAAAGAAATCATACATTAAAGAAGGAAATCTTCATCCCACCAAAGAAGAAATAGCAAGGCAAGTAGGAATTACAGTAGATAAGTTGGAAATGTTGCTATTTACTGCAAGAACACCACTTTCAATGGAGCGAGCTGTGTGGGCAGATCAGGATACAACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAAATCCCAAATGTATCTGTTGCGAAACAACTAATGAGGAGCCACGTACGCAACCTTTTAAATGTGTTGAACCCAAAAGAAAGGAGGGTAATAAGGCTGAGATTTGGGATTGAAGACGGCTACGAAAAATCTTTGTCAGATATTGGCAAGGTGTTGGGTGTTTGTAAGGAAAGGGTCAGGCAATTGGAGAGCCAAGGATTGAACAAGCTCAAGCAGAACCTTGTTAGTCAACAGCTTGATGCATACGTAGACTTGATTGTATAA 1668 0.4353 MFSPSTPFPSRILHSPSVMMPPDQAAPAVTSWSSSFAAQYFPTSVLLQEHRDEYKPLLHVSKEDKTSQATMNTRVMDVASVREKNNTGDVDESVHNCMRQLHLRCHLQNLLASSATEDFGTSSSTTQPADGFQWNALSLAKQALSASKQAAAAAEELKLIEVDDNSDDPLPLGLASTSLAHSSLGKNKIVRSTRLKERRSKQRKVSKSKVLDEEKYLTRKFDVQRRLRIEKKLKEGLEGNDPLRLFLWGPETKRLLNLEEESKLIAQIQDLLRLKETNIKLQSQFGREPTLAEWADGVGLSCRALQARLHCGNRSKDKLINANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRGVEKFKPKAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYTLLGKVTEAKKSYIKEGNLHPTKEEIARQVGITVDKLEMLLFTARTPLSMERAVWADQDTTFQEITADSAIEIPNVSVAKQLMRSHVRNLLNVLNPKERRVIRLRFGIEDGYEKSLSDIGKVLGVCKERVRQLESQGLNKLKQNLVSQQLDAYVDLIV 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02488 555 ProSitePatterns Sigma-70 factors family signature 1. 343 356 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 Pfam Sigma-70 region 2 319 383 IPR007627 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 452 551 IPR013324 -
Car03g02488 555 Gene3D - 474 554 IPR036388 -
Car03g02488 555 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 317 542 IPR014284 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 CDD Sigma70_r4 481 539 - -
Car03g02488 555 PIRSF Sigma_factor_SigC 3 555 IPR016262 -
Car03g02488 555 Gene3D - 392 469 IPR036388 -
Car03g02488 555 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 11 555 - -
Car03g02488 555 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 392 465 IPR013324 -
Car03g02488 555 PRINTS Major sigma-70 factor signature 343 356 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 PRINTS Major sigma-70 factor signature 367 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 PRINTS Major sigma-70 factor signature 491 503 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 PRINTS Major sigma-70 factor signature 512 527 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 PRINTS Major sigma-70 factor signature 527 538 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 11 555 - -
Car03g02488 555 Pfam Sigma-70, region 4 487 540 IPR007630 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 239 388 IPR013325 GO:0003700|GO:0006352|GO:0006355
Car03g02488 555 Gene3D - 135 388 - -
Car03g02488 555 Pfam Sigma-70 region 3 400 471 IPR007624 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02488 Car-Chr3 70695140 70700025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02488 - - gmx:100793539 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02488 03 70695140 70700025 Car03g02488 03 70695140 70700025 ECH
Car04g01880 04 20341425 20346625 Car03g02488 03 70695140 70700025 PCT