Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01417 ATGAAGCTACGAAAATCTTCTCTGGGTTTATTTCTAGGGTTTTTATTACTATCGTTGACGCCGTCTTCAATAGCGAAATTCGTGGTGGAGAAAAACAGCTTGAGGGTAACTTCGCCTGATAGTATCAAAGGAACTTACGATAGCGCGATTGGCAACTTTGGGATACCACAATATGGAGGTAGCATGGCTGGGAACGTTCTTTACCCAAAGGATAATCGAAAGGGTTGTAAAGAGTTTGATGACTCTGGGATTTCCTTCAAATCTAAGCCTGGTGCTCTTCCCACCTTCGTTTTGCTCGATCGAGGAAATTGCTTCTTTGCTTTGAAGGTATGGAATGCTCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCGGATGATATTGAGGAAAAATTAATAACCATGGACACACCTGAAGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCATCGGCTCTCATTGAAAAGAAATTTGGTGAAAAACTAAAGAGTGCCATAAGTAGTGGGGATATGGTCAATGTAAATCTTGACTGGAGAGAGGCTGTCCCTCACCCAGACGATCGTGTGGAGTATGAGCTGTGGACCAACAGCAACGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCGGCGCAAATATTAGAGAAAGGTGGTTATACTCAGTTTACACCCCATTACATAACTTGGTATTGTCCTCAGGCATTCACGTTAAGTAAGCAGTGCAAGTCTCAGTGCATTAACCATGGAAGATATTGTGCTCCAGATCCTGAGCAGGATTTCAGCACGGGTTATGATGGGAAAGATGTGGTTGTTGAAAATTTGAGGCAGTTGTGTGTTTACAAGGTGGCCAATGAAACCAAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGGTGCCCAATGAAGGAGAAAAAATACAATAAGCAATGTGCAGATGCTGTCATCGAATCACTTGGTCTTGATATTAAAAAGATTGAAAAGTGCATGGGAGATCCAGATGCCGATTCTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAGGGATCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAGTCGACAGTATCGAGGAAAATTGGAGAAAGGTGCTGTCATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGATGTGGAGACGAATGAATGCTTGGAGAACAATGGTGGTTGTTGGCAGGATAAAGGAGCTAACGTAACTGCCTGCAAGGATACTTTCCGTGGGCGTGTATGTGAATGCCCCTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACCTGTGAAGCCAGTGGACCTGGACGGTGCAAAATAAACAATGGAGGCTGTTGGCATGAAGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATAACGGAGGGGTTAAATGCGTGTGTCCTGCAGGGTTTAAAGGCGACGGTGTTAAAAATTGTGAAGACATTGATGAATGTAAAGATAAAAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGCAGCTATAACTGCAGTTGCAGTGGGGATCTTCTGTATATCAGGGACCATGATGCCTGCATAAGTAAAACTGCCAGTCAAGAAGGAAAGTCTGCTTGGGCTGCATTTTGGGTCATTGTAATTGGTTTAGTTCTGGCAGCTTCAGGGGCATACCTTGTCTACAAATATAGAATAAGGTCATATATGGATTCTGAAATAAGGGCAATCATGGCACAGTATATGCCCTTGGACAGCCAAGCAGAAGTTGTAAATCATGTCAACGATGAAAGAGCATGA 1893 0.4295 MKLRKSSLGLFLGFLLLSLTPSSIAKFVVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVLYPKDNRKGCKEFDDSGISFKSKPGALPTFVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKKFGEKLKSAISSGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVYKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKQCADAVIESLGLDIKKIEKCMGDPDADSENPVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSDVETNECLENNGGCWQDKGANVTACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACLDNGGVKCVCPAGFKGDGVKNCEDIDECKDKKACQCPECSCKNTWGSYNCSCSGDLLYIRDHDACISKTASQEGKSAWAAFWVIVIGLVLAASGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQAEVVNHVNDERA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01417 630 Pfam Complement Clr-like EGF-like 501 521 IPR026823 -
Car04g01417 630 Gene3D - 24 188 - -
Car04g01417 630 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Car04g01417 630 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Car04g01417 630 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 609 - -
Car04g01417 630 Coils Coil 622 630 - -
Car04g01417 630 CDD PA_VSR 52 179 - -
Car04g01417 630 MobiDBLite consensus disorder prediction 347 368 - -
Car04g01417 630 Gene3D Laminin 411 467 - -
Car04g01417 630 SMART egfca_6 518 560 IPR001881 GO:0005509
Car04g01417 630 Gene3D Laminin 472 552 - -
Car04g01417 630 CDD EGF_CA 518 546 - -
Car04g01417 630 Pfam PA domain 64 165 IPR003137 -
Car04g01417 630 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 15 609 - -
Car04g01417 630 MobiDBLite consensus disorder prediction 347 365 - -
Car04g01417 630 SUPERFAMILY PA domain 96 171 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01417 Car-Chr4 14434295 14440277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01417 25 630 Miscellaneous Gene Families AT2G14740 85.314 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01417 - - gmx:100803958 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01417 04 14434295 14440277 Car04g01417 04 14434295 14440277 ECH
Car08g00030 08 279147 283712 Car04g01417 04 14434295 14440277 PCT