Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00583 ATGACTTCTTTAAGTAGAGAATTGGTGTTTCTCATACTTCAGTTTCTCGAGGAGGAGAAGTTTAAGGAATCCGTGCACAAGCTTGAGAAAGAATCAGGATTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGTGAATGGGAAGAAGTTGAAAAGTATTTATCAGGGTTTACCAAAGTTGACGATAATAGATATTCAATGAAAATATTCTTTGAAATTAGGAAGCAGAAATATCTGGAAGCACTTGATCGGCAAGACAAGCCAAAGGCTGTGGAGATATTAGTGGGTGATTTAAAAGTGTTCTGCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAATTCTTAATAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACCGCTCGAAGTATTATGTTGATAGAACTAAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTGCCTTCCCGACCCTTAAGTCATCAAGACTGAGAACTTTAATCAATCAAAGTCTGAACTGGCAGCACCAGCTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTTACAGATCATACTTGTGCATCTTCTAATGGTCCACTCGCACCTACACCTGTCAATCTTCCGATTTCTGCAGTTGCAAAGCCTGCTGCTTATACTTCACTTGGAGCTCATGGTCCCTTCCCTCCTGCTGTGGCAACTGGTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTTCAAGCAGCTGTTGTCGCAGCATCAACCATTCCAGTCCCTCAGAATCAAGTAGCTATCTTGAAACGTCCAAGAACACCTCCGGTAACTCCTGGGATCGTTGACTATCAGAGTGCTGATCATGATCAGTTAATGAAAAGGCTTCGTCCTGGTCATTCTGTAGAGGAGGTTTCCTATCCCGTGGCTCGACAAACCTCTTGGTCATTGGATGATCTCCCTAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCGCACCACACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATTACCCTCTGGGAACTCAGCTTGCGAGAAAGGTTGCTCTCAAAGCCGTTCAAGATATGGGATTTATCAGCATGCTCATTACCATTTCAGGCAGCTGCAGTCAAGGATGCACCTATTTCTGTCAGTCGTGTCACATGGAGCCCTGATGGAAACTTTGTGGGTGTTGCGTTTACTAAACATCTGATTCATTTATATGCCTACACTGGGTCAAATGAGCTAGTCCCGCGTATAGAGGTTGATGCCCATGTCGGTGGTGTGAATGATTTGGCATTTGCTCTTCCAAATAAACAGTTGTGCATTGTAACTTGTGGGGATGATAAGTTGATAAAGGTGTGGGATGCAAATGGACGAAGACTATTTACCTTTGAGGGGCATGACGCACCTGTATATTCAGTTTGTCCTCATCACAAAGAGAGCATTCAGttcatattttcaacagccattgatgggaaaataaaggcctggttatacgataacatgggttctagagttgactatgacgctcctggtcattggtgcactacaatgctttacagtgctgacggaagtagattgttttcttgcgggacaagtaaagatggagagtcttttcttgttgaatggaacgaaagtgaaggagccattaagagaacgtacaatggattcagaaagaaatctgctggtgtcgtgcagtttgacacaacccagaatcgctttttggttgccggtgaagatggccaagtgaagttttgggacatggacaatgttAATCTTCTAACAAGCACTGATGCAGATGGTGGATTACAGGGCCTTCCACGCTTGAaattcaataaggaaggaaatgttctcgctgttactactgtggacaatggattcaagatactggctaatgctactgGTCTTAGATCCTTAAGAACAATTGAAACTCCAGCATTTGAAGCATTGAGGCCGCCCATCGAATCTGCTGCGGTCAAGGTATCTGGCTCTTCTTCTGTTAATGTTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCGCCTCCAATTCTTAATGGAGCCGATCCCATGAGTCGAAGTGTAGAGAAATCAAGAACTGTGGAAGATGCAACAGACAGAACTAAACCATGGCAATTGTCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGACAACGCAGACTCTTTCAGCAAGGTTGTACGACTTCTATATACAAATTCTGCTGTTGGTATCTTGGCCCTTGGTTCAAATGGTGTCCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACGCTGGCAACCCAACAGCGGTCTTCTTATGACTAATGATATTGCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAAGTTTCACTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGTCGCCACCTCCTGCCTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATATCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAGACGAATAACCGGTTTAGCCTTTTCAACCAATCTTAACATCTTGGTATCATCTGGTGCTGATGCTCAACTGTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAAACAATTCCAATTCAGCTACCTGCGGGAAAGTCACATGTTGGTGATACACGTGTTCAGTTCCATTCTGACCAACTTCGCCTATTGGTAGTTCACGAGACTCAATTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGTCTGCTCCCATATCATATGCAGCATATTCCTGCAACAGTCAGTTAATTTATGCTTCATTTTGTGATGCAAACATTGGGGTTTTTGATGCTGATAGCTTGAAACTAAGATGTCGTATTGCCCCATCAATATGCTTGTCATCAGCCGCTTTAAATAGAAGCCAAGCCGTGTATCCTCTTGTGATTGCGACACATCCTCTAGAACCTAACCAGTTTGCTGTTGGAATGAGTGATGGGTCCGTCAAAGTGATAGAACCCAGTGAATCAGAGGGTAAGTGGGGATCTTCTCCGCCTATGGACAACGGAATATTAAATGGATCTGCATCTAGCAGTCACACGGCCGAGCAGGCCCAAAGATAA 3375 0.3852 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFCTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCASSNGPLAPTPVNLPISAVAKPAAYTSLGAHGPFPPAVATGNANALAGWMANASASSSVQAAVVAASTIPVPQNQVAILKRPRTPPVTPGIVDYQSADHDQLMKRLRPGHSVEEVSYPVARQTSWSLDDLPRTVAMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLRERLLSKPFKIWDLSACSLPFQAAAVKDAPISVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELVPRIEVDAHVGGVNDLAFALPNKQLCIVTCGDDKLIKVWDANGRRLFTFEGHDAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLVAGEDGQVKFWDMDNVNLLTSTDADGGLQGLPRLKFNKEGNVLAVTTVDNGFKILANATGLRSLRTIETPAFEALRPPIESAAVKVSGSSSVNVSPVNCKVERSSPVRPPPILNGADPMSRSVEKSRTVEDATDRTKPWQLSEILDPVQCRSVTMPDNADSFSKVVRLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKTIPIQLPAGKSHVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIYASFCDANIGVFDADSLKLRCRIAPSICLSSAALNRSQAVYPLVIATHPLEPNQFAVGMSDGSVKVIEPSESEGKWGSSPPMDNGILNGSASSSHTAEQAQR 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00583 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Car04g00583 1124 SMART ctlh 34 92 IPR006595 -
Car04g00583 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Car04g00583 1124 MobiDBLite consensus disorder prediction 1090 1124 - -
Car04g00583 1124 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Car04g00583 1124 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Car04g00583 1124 SUPERFAMILY WD40 repeat-like 831 1091 IPR036322 GO:0005515
Car04g00583 1124 PANTHER PROTEIN, PUTATIVE-RELATED 1 1120 - -
Car04g00583 1124 SMART WD40_4 574 614 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 822 858 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 999 1035 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 861 901 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 1056 1090 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 335 374 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 904 943 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 528 571 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 441 482 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 484 525 IPR001680 GO:0005515
Car04g00583 1124 SMART WD40_4 397 435 IPR001680 GO:0005515
Car04g00583 1124 SUPERFAMILY WD40 repeat-like 343 656 IPR036322 GO:0005515
Car04g00583 1124 MobiDBLite consensus disorder prediction 1105 1124 - -
Car04g00583 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Car04g00583 1124 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Car04g00583 1124 Gene3D - 326 534 IPR015943 GO:0005515
Car04g00583 1124 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1120 IPR027728 GO:0006355
Car04g00583 1124 Gene3D - 828 1104 IPR015943 GO:0005515
Car04g00583 1124 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Car04g00583 1124 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Car04g00583 1124 SMART Lish 4 36 IPR006594 GO:0005515
Car04g00583 1124 MobiDBLite consensus disorder prediction 703 737 - -
Car04g00583 1124 Gene3D - 539 692 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00583 Car-Chr4 5833709 5843584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00583 429 642 Miscellaneous Gene Families AT5G08390 22.831 6.81e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00583 - - gmx:100793575 2050.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02933 03 74593504 74602881 Car04g00583 04 5833709 5843584 PCT