Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02933 ATGACTTCTTTAAGCAGAGAATTGGTGTTTCTCATACTTCAATTTCTTGAAGAGGAAAAGTTCAAAGAATCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAATACTTTGAAGAAAAAGTACAGGCCGGTGAATGGGAAGAAGTGGAGAAGTATTTATCAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTGGAAGCCCTTGATAGGCAAGATAAGGCAAAAGCTGTTGAGATATTAGTGGGTGATTTAAAAGTATTCTCCACCTTCAACGAGGAATTATACAAAGAAATAACCCAGCTGTTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGTTGTTAGAGCTAAAAAAGCTCATAGAGGCAAATCCTTTGTTCCGTGATAAGCTTGTCTTCCCTACTCTGAAGTCGTCAAGGTTGCGGACATTAATCAATCAAAGTTTGAACTGGCAACACCAGCTTTGCAAAAACCCAAGGCCAAACCCAGATATTAAAACTTTATTCATTGATCACTCATGTACACCTTCCAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGCTGCTTATACTTCACTTGGAGTGGGAGTTCATGGTCCCTTTCCACCTGCTGCAGCAGCAACTGGTAATGCTAATGCCAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCGGTTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTTCAACAACTCCTGGCATGCTAATGAAAAGACTCCGGCCTGCTTTTTCCGTGGAGGAGGTTTCTTATCCAACAGCTCGACAAGCCTCTTGGTCGCAGGATGATCTTCCAAGAACAGTTGCTATGTCTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTCCTTGCAGTTGGTTCAAATAACGGTGAAATTTCCCTCTGGGAACTTGGGTTGCGTGAAAGGTTGGTTTCAAAACCATTCAAGATATGGGACATAGCAGCATGCTCATTACCATTTCAGGCAGCAATGGTCAAAGACACACCTATTTCTGTCAGCCGTGTCACATGGAGCCTTGATGGAAGTTTTGTGGGTGTTGCATTTACAAAGCATTTGATTCACATATATGCCTGCACGGGGTCAAATGAGCTTGCCCAGCGTATGGAGATTGATGCCCATATTGGTGGTGTGAATGACTTGGCATTTGCTTATCCAAATAAACAACTCTGTATCGTGACTTGTGGAGATGATAAATTGATAAAGGTGTGGGATTTAACGGGACGAAGATTATTTAACTTTGAAGGGCATGATGCTCCTGTATATTCTGTCTGTCCTCATCACAAGGAGAGCATTCAGTTCATAttttcaactgccattgatggtaaaataaaagcctggctatatgataatatgggttctagggttgactatgatgcccctggtcactggtgtactacaatgctttacagtgccgatggaactaggttattttcttgtgggacgagtaaagatggagagtcattccttgttgaatggaatgaaagtgaaggagccattaagagaacatacaatgggttcagaaagaaatctgctggtgtagtgaagtttgacacaacccaaaaccgctttttggctgctggggaagacggccaaattaagttttgggacatggaCAACATTAATCTTCTAACAAGCACTGATGCAGAGGGTGGACTACAGGGCCTTCCACACTTGAGATTCAATAAAGAAGGAAATCTTCTTGCTGTTAGTACCGCAGATAATGGATTCAAAATTCTTGCCAATGCTAGTGGTCTAAGATCCCTAAGAACAATTGAAACTCCGGCGTTTGAAGCATTAAGGTCTCCCGTTGAATCTGCTGCAATCAAGGTACCTGGCTCTTCTGCTGTTAATGTTAGTCCTATCAGCTGTAAAGTGGAAAGAAGCTCCCCTGCCAGGCCTTCTCAAATTCTTAATGGAGTTGATCCCACTGTTAGAAATGTGGAAAAACCTAGAGCAGTGGAAGATGCAATGGATAGAACAAAATCATGGCAGCTGTCTGAAATTGTGGATCCTGTCCAATGTCGGTTAGTTACCATGCCTGACAGCACAGATTCTTCCAGCAAGGTCGTTCGACTTTTATATACAAATTCTGGTGCTGGTATTTTGGCACTTGGTTCAAATGGTGTTCAGAAGTTGTGGAAGTGGGTTCGGAATGAACAGAATCCTAGTGGGAAGGCGACTGCCAGTGTTGTTCCGCAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGACGTTTCGGGTGTCAACCTTGATGAAGCGGTTCCTTGCATTGCACTCTCAAAGAATGATTCATATGTTATGTCTGCATGTGGTGGAAAGGTTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCGGCCTCTACGTTTCTGGCTTTCCACCCTAAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACTATTCATATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAAAAGCGAATTTCTGGCCTAGCTTTTTCCACCAATCTTGGCATCCTGGTTTCATCTGGTGCTGATGCTCACCTTTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCGATTCAACTACCTGCAGGTAAGGTTCCTGTTGGTGAAACTCGGGTGCAGTTTCATTCAGACCAACTCCGGTTATTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTAGACAGTGGGTTCCACAAGATGCTCTGCCTGCTCCCATATCAAATGCAGCTTATTCTTGCAACAGTCAGTTAATTTATGCTACCTTTTGCGATGGCAACACGGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGTCGCATTGCACCATCCATGTACTTTACACCATCAACTTTAAACGGAAGCCAAGGTGTGTATCCTGTTGTTGTGGCAGCTCATCCTCTAGAGCCCAACCAATTTGCCCTTGGATTGACTGATGGGTCAGTGAAAGTGATAGAGCCCAATGAATCAGAGGGAAAGTGGGGATCTAGTCCACCTATGGATAATGGAATGATGAATGGTAGGACGGCATCATCATCAACAACAAGCAACCACACACCCGATCAGGGCGCACAACGATAA 3387 0.3936 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGVGVHGPFPPAAAATGNANANANALAGWMANASVSSSVQAAVVTASTIPVPQNQVSILKRPRTPSTTPGMLMKRLRPAFSVEEVSYPTARQASWSQDDLPRTVAMSLHQGSSVTSMDFHPSHQTLLLAVGSNNGEISLWELGLRERLVSKPFKIWDIAACSLPFQAAMVKDTPISVSRVTWSLDGSFVGVAFTKHLIHIYACTGSNELAQRMEIDAHIGGVNDLAFAYPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHDAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVKFDTTQNRFLAAGEDGQIKFWDMDNINLLTSTDAEGGLQGLPHLRFNKEGNLLAVSTADNGFKILANASGLRSLRTIETPAFEALRSPVESAAIKVPGSSAVNVSPISCKVERSSPARPSQILNGVDPTVRNVEKPRAVEDAMDRTKSWQLSEIVDPVQCRLVTMPDSTDSSSKVVRLLYTNSGAGILALGSNGVQKLWKWVRNEQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPKDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDTWEKRKSIPIQLPAGKVPVGETRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDALPAPISNAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIAPSMYFTPSTLNGSQGVYPVVVAAHPLEPNQFALGLTDGSVKVIEPNESEGKWGSSPPMDNGMMNGRTASSSTTSNHTPDQGAQR 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02933 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Car03g02933 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1124 IPR027728 GO:0006355
Car03g02933 1128 SMART WD40_4 439 480 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 572 612 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 526 569 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 902 941 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 820 856 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 482 523 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 332 372 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 991 1033 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 1047 1088 IPR001680 GO:0005515
Car03g02933 1128 SMART WD40_4 859 899 IPR001680 GO:0005515
Car03g02933 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Car03g02933 1128 Gene3D - 321 561 IPR015943 GO:0005515
Car03g02933 1128 Gene3D - 562 684 IPR015943 GO:0005515
Car03g02933 1128 Pfam WD domain, G-beta repeat 908 941 IPR001680 GO:0005515
Car03g02933 1128 Pfam WD domain, G-beta repeat 340 371 IPR001680 GO:0005515
Car03g02933 1128 Pfam WD domain, G-beta repeat 446 480 IPR001680 GO:0005515
Car03g02933 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 944 - -
Car03g02933 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 950 IPR001680 GO:0005515
Car03g02933 1128 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 906 1095 IPR011044 -
Car03g02933 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 464 946 IPR011047 -
Car03g02933 1128 SUPERFAMILY Putative isomerase YbhE 339 527 - -
Car03g02933 1128 SMART ctlh 34 92 IPR006595 -
Car03g02933 1128 PANTHER PROTEIN, PUTATIVE-RELATED 1 1124 - -
Car03g02933 1128 Gene3D - 759 1099 IPR015943 GO:0005515
Car03g02933 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 481 IPR001680 GO:0005515
Car03g02933 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 621 IPR001680 GO:0005515
Car03g02933 1128 MobiDBLite consensus disorder prediction 1104 1128 - -
Car03g02933 1128 SMART Lish 4 36 IPR006594 GO:0005515
Car03g02933 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Car03g02933 1128 MobiDBLite consensus disorder prediction 1089 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02933 Car-Chr3 74593504 74602881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02933 445 654 Miscellaneous Gene Families AT5G08390 25.701 5.97e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02933 - - gmx:100800771 2016.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02933 03 74593504 74602881 Car03g02933 03 74593504 74602881 ECH
Car03g02933 03 74593504 74602881 Car04g00583 04 5833709 5843584 PCT