Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00199 ATGGCATCATCAAGTTCCAGCTCCATCTCCATCCTTCCCAGTGAAGTTAGAATCGTTGTTCTCGGTGACATGAAAACCGGAAAATCCACCCTCATTGCAACTATGGCGTCGGATTCTTACCAAAACAATGTTCCCTCATTTCTTTCACCACTTCGCTTGCCTAACAATTCATTCCCGGATTCTGTCTCTCTCGTAGTTATCGACACTCCTTCCAGTGAAAGGCAATTAGATATGGTTACTGAAGAACTGAGTCGTGCCGATGCTGTGATTGTAACCTATGATTGTAATAAACCTGCTACCTTTGAGCGTGTGAGTACACACTGGCTGCCTAAACTTCAGAGGCTCGAGGTGAAGGCACCTGTGATTGTGGTTGGTTGCAAGCTTGATCTTCGCGATGTAAGTAAGGAAGTGAACTTAGAGAGTCTCACTACAAATATCATGCAGCAGTTCAGAGAAGTTGTTACTTGTATTGAATGCTCTGCAGCTACACTGTATCAGGTCCCTGAAGTTTTTTATTTTGCACAAAAAGCGGCACTTCATCCAGTGGATCCTTTGTTCGATTATGAAACAAATGCTTTAACAGATCGGTGTGTAAGGGCACTGAGAAGAATTTTTAAACTTTTTGATTACAACATGGATGGCACCCTCTTTGATCAAGAACTAAATGACTTTCAGGTTAAATGCTTCGGTGCATCATTGCAGCGGTCTGACGTAACTCAAATAAAAAAAATGGTAGAGCAGAACGTTCCCGAAGGAGTCAATTCTGCTGGTCTTACTTTTCGTGGCTTCGTTGAAATCCATAATATGTTTCTAAAGAAAGGGCGAACAGAGACATTCTGGGAGGTTCTAAGAAAGTTTGGATATGGTAACGATTTGAAACTGCGGGATGATATTCTTAAAGTTCCATCTAAACAGGCTTCTGATCAGAGTGTGGAGCTGACATGTGAAGCCATAGAGTTTCTGAAGGGTGTCTTTAGATTATTAGATACGGATAAGGATCAATTACTTCGACCTGAAGAAGTCGATAATCTATTTGATTCTGCTCCAGAAAGTCCGTGGAACAATTTTCCATACAAAGATGCAGCTGAGGCAACTGACATGGGTTATTTATCTTACAACGGATTTCTGTCTCAGTGGGCCCTTATGACATCACTAGATCCACAATATGCCTTGGCCAATTTGGTTTACATTGGATATAGATCTAAGCCTGAGGCAGTATTCCGTGTCACTCGTAAAAGATCAGAAGATCGCAAGAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAATCTGCTTTGCTCTACTCCTTTTTGGGAAGGCCTTTCTCAGATAATTATACTCCGACAACTGTTGGGCAGTATGCAGCAAACTTCGTTGAATTAATAGGGGGAACTAAGAAAACACTCGTATTACGCGAGATTCCAGAGGATGAAGTGTCAAGTTTTTTGTCAAATCGGGATTGTTTGGCAGCTTGTGATGTCGCTGTTTTTGTACATGACAGCTCAGATGGATATTCATGGAAGAAATCCATAGATTTGCTCGAGCAGGTTGTTGACCATGGAGAGCGAACTGGTCACAAAGTTCCTTGCCTCCTCATTGCTGCTAAGGATGATTTAACTTTATTCCCAAGGACAGTACTAGATTCAGTCAAGGTTGCTCAGGAATTGAAAATAGATGCGCCTATTCGCTTGAGCGTGAAATCAGGTGATTCAAATGCCCTATATAGTAGGATTGTCAATGCTGCAGAACACCCTCATTTGAGTCTTCCAGAAACTGAGTTTGTGAAGAAAAGAAAGCAAAACCAGCAGCTTATGCACTCTATATTTTTCGCCATAGCTGGAGCTGCTATGGCGTTCGCGGGCATATCAGTTCGTCGTGCACGAGCGAAAAGGAATTCTTCTTAA 1932 0.4182 MASSSSSSISILPSEVRIVVLGDMKTGKSTLIATMASDSYQNNVPSFLSPLRLPNNSFPDSVSLVVIDTPSSERQLDMVTEELSRADAVIVTYDCNKPATFERVSTHWLPKLQRLEVKAPVIVVGCKLDLRDVSKEVNLESLTTNIMQQFREVVTCIECSAATLYQVPEVFYFAQKAALHPVDPLFDYETNALTDRCVRALRRIFKLFDYNMDGTLFDQELNDFQVKCFGASLQRSDVTQIKKMVEQNVPEGVNSAGLTFRGFVEIHNMFLKKGRTETFWEVLRKFGYGNDLKLRDDILKVPSKQASDQSVELTCEAIEFLKGVFRLLDTDKDQLLRPEEVDNLFDSAPESPWNNFPYKDAAEATDMGYLSYNGFLSQWALMTSLDPQYALANLVYIGYRSKPEAVFRVTRKRSEDRKKQKTERNVFQCYVFGSKNAGKSALLYSFLGRPFSDNYTPTTVGQYAANFVELIGGTKKTLVLREIPEDEVSSFLSNRDCLAACDVAVFVHDSSDGYSWKKSIDLLEQVVDHGERTGHKVPCLLIAAKDDLTLFPRTVLDSVKVAQELKIDAPIRLSVKSGDSNALYSRIVNAAEHPHLSLPETEFVKKRKQNQQLMHSIFFAIAGAAMAFAGISVRRARAKRNSS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00199 643 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Car04g00199 643 Pfam Ras family 431 550 IPR001806 GO:0003924|GO:0005525
Car04g00199 643 Gene3D - 294 484 - -
Car04g00199 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 212 IPR027417 -
Car04g00199 643 PANTHER RHO FAMILY GTPASE 13 491 IPR003578 GO:0005525|GO:0007264
Car04g00199 643 Pfam EF hand associated 232 315 IPR013567 -
Car04g00199 643 Gene3D - 187 292 - -
Car04g00199 643 ProSiteProfiles Miro domain profile. 13 180 IPR020860 GO:0003924|GO:0005525
Car04g00199 643 SMART rho_sub_3 18 181 IPR001806 GO:0003924|GO:0005525
Car04g00199 643 PIRSF Miro 12 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Car04g00199 643 ProSiteProfiles Miro domain profile. 424 593 IPR020860 GO:0003924|GO:0005525
Car04g00199 643 PANTHER MITOCHONDRIAL RHO GTPASE 13 491 - -
Car04g00199 643 SMART rab_sub_5 16 181 - -
Car04g00199 643 Pfam EF hand associated 353 421 IPR013566 -
Car04g00199 643 SUPERFAMILY EF-hand 188 382 IPR011992 -
Car04g00199 643 ProSiteProfiles small GTPase Rab1 family profile. 8 242 - -
Car04g00199 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 597 IPR027417 -
Car04g00199 643 PRINTS Transforming protein P21 ras signature 16 37 - -
Car04g00199 643 PRINTS Transforming protein P21 ras signature 117 130 - -
Car04g00199 643 PRINTS Transforming protein P21 ras signature 156 178 - -
Car04g00199 643 ProSiteProfiles EF-hand calcium-binding domain profile. 316 351 IPR002048 GO:0005509
Car04g00199 643 Gene3D - 491 591 IPR027417 -
Car04g00199 643 Gene3D - 12 183 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00199 Car-Chr4 2046925 2060254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00199 14 643 EF-hand Containing Proteins AT3G63150 53.566 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00199 K07870 - gmx:100806983 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02244 03 68411144 68420142 Car04g00199 04 2046925 2060254 PCT