Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00180 ATGGCATTTAGAGGGTCTTTCCTGTGTCTAGTTATGGTCCTAATGACCAACATGGTGACACAAAATGCAGCCCAATCCAGTTGTACCACTACACTCACTAGCTTGAGTCCTTGTCTAAACTACATAATGGGGAGTTCTTCAACTCCATCAGCTACATGTTGCTCACAACTTTCAAGTGTTGTTCAATCTTCTCCACAGTGTCTCTGCTCCTTGCTTAATGGTGGTGCTTCATCTTTTGGTATCACCATTAATCAAACTCTTGCTCTCTCTCTCCCTGCCTCTTGTAAAGTACAAACTCCACCTGTTAGCCAATGTAAATCTGGCAATGGACCAATATCTCCTACAACTTCAACTTCTCCAGTGAGCTCTCCTGTTAATTCTCCAACTGAAGGCACAATTACACCTTCTGCTTCAGACTTTCCCTCAGGATCGAAAAGTGTTCCATCAACAGACGGTAGCTCATCTGATGGAAGCACTATTAAAATCTCATTCCACTTGGTTCTTTCTCTAGTTGCCATTGTGTTTTGTGTCATGACTAAGTTTTGA 546 0.4231 MAFRGSFLCLVMVLMTNMVTQNAAQSSCTTTLTSLSPCLNYIMGSSSTPSATCCSQLSSVVQSSPQCLCSLLNGGASSFGITINQTLALSLPASCKVQTPPVSQCKSGNGPISPTTSTSPVSSPVNSPTEGTITPSASDFPSGSKSVPSTDGSSSDGSTIKISFHLVLSLVAIVFCVMTKF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00180 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Car04g00180 181 Gene3D - 24 105 IPR036312 -
Car04g00180 181 Pfam Probable lipid transfer 10 105 IPR016140 -
Car04g00180 181 SMART aai_6 28 105 IPR016140 -
Car04g00180 181 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 178 IPR043325 -
Car04g00180 181 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Car04g00180 181 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Car04g00180 181 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Car04g00180 181 MobiDBLite consensus disorder prediction 101 154 - -
Car04g00180 181 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 178 - -
Car04g00180 181 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00180 Car-Chr4 1865862 1866895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00180 7 175 Lipid Metabolism Gene Families AT3G22600 48.837 1.64e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00180 - - gmx:100306151 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00180 04 1865862 1866895 Car04g00180 04 1865862 1866895 ECH
Car04g00180 04 1865862 1866895 Car03g02265 03 68639341 68645701 PCT