Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00060 ATGATGCCGAACCTCTGCAATATTTCTAATACTTGTGCTTCTTCAACGTTAATGTTCAACGTTAAACCTCACCCACCACCACCTCTCAATTTTTACAATTTATCAAGGAAGCATCGCTGCAGAAATTTCAGTGTCAAAATGTGCTCCTCGTCCGTTCCTCAAAACGCCGTCGTTGTGGGTTGTGGAGCTTTGGCCGTTGATTTCTTGGCTACCGTTGATGCTTACCCTAAACCAGATGACAAAATCAGAAGCACCAGCTTGAAGGTTCAAGGAGGTGGCAATGCTGGCAATGCTTTAACATGTCTTGCTCGCTTAGGTCTAAACACAAGGATCATTTCTAAGATTGCAGATGACAGCCAAGGCAGGGGCATATTAGATGAGCTAAGGGCTGATGGGGTAGATACATCCTTTATTGTGGTATCTAAAGAGGGAACTTCACCATTTACATATATTATTGTGGACAACGAAACGAAGACTCGCACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCAAGTTTGTTATCTGCATTGGATGAAGCAAGCATTGTATATTTTGATGGGAGGTTGCATGAAACAGCTCTAGTTGTTGCCCATGAGGCAACTAAGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCGAGGGAGGGGTTGGATGATCTCCTGAAATTAGCTGATTATGTGGTATGTTCAGCAAAGTTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCACAGGCACTTGTTTCTATGCTTTTAAGGTTGCCCAACTTAAAATTTGTAACTGTGACTTTGGGAAAAGAAGGTTGTATAATGCTGGAGAGAAGTGTTAATGCAAGTCCTTCCACGGAAGAAGTGGATGTAGACAACTTTTTGGAATCACTGGAGTTAAGAAAGGATAAGAGTGCTCCCATTCCAACCTGTGTATCATCGTCTGTGGCAAAATTGAAGGCAGAAGGAATAGGAACGGTTACTGGGAAACTATATGTTGGAACAGCTGAGAGTATTCCACCATCAGAGCTTATTGATACCACCGGTGCTGGGGATGCATTTATTGGAGCTGTGATCTATGCTATTTGTTCGAAGTTTTCACCAGAGACAATGCTACCCTTTGCTGCTAATGTGGCAGGTGCAAAGTGCAGAGATCTAGGAGCACGAAGTGGTCTTCCATACGGCGCAGACCCACGCTTAACATCCTTTATTCAGTAG 1233 0.4323 MMPNLCNISNTCASSTLMFNVKPHPPPPLNFYNLSRKHRCRNFSVKMCSSSVPQNAVVVGCGALAVDFLATVDAYPKPDDKIRSTSLKVQGGGNAGNALTCLARLGLNTRIISKIADDSQGRGILDELRADGVDTSFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDEASIVYFDGRLHETALVVAHEATKKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPQALVSMLLRLPNLKFVTVTLGKEGCIMLERSVNASPSTEEVDVDNFLESLELRKDKSAPIPTCVSSSVAKLKAEGIGTVTGKLYVGTAESIPPSELIDTTGAGDAFIGAVIYAICSKFSPETMLPFAANVAGAKCRDLGARSGLPYGADPRLTSFIQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00060 410 Pfam pfkB family carbohydrate kinase 61 285 IPR011611 -
Car04g00060 410 Pfam pfkB family carbohydrate kinase 337 398 IPR011611 -
Car04g00060 410 SUPERFAMILY Ribokinase-like 58 399 IPR029056 -
Car04g00060 410 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 45 409 - -
Car04g00060 410 CDD ribokinase_group_B 57 399 - -
Car04g00060 410 PRINTS Ribokinase signature 60 81 IPR002139 GO:0016301
Car04g00060 410 PRINTS Ribokinase signature 87 106 IPR002139 GO:0016301
Car04g00060 410 PRINTS Ribokinase signature 269 280 IPR002139 GO:0016301
Car04g00060 410 Gene3D - 57 395 IPR029056 -
Car04g00060 410 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 351 364 IPR002173 GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00060 Car-Chr4 652915 658774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00060 - - mtr:MTR_1g069320 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02383 03 69734551 69741313 Car04g00060 04 652915 658774 PCT