Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02028 ATGTGGGCTCTTCGTCGAGCTTCATTCCCTCTCCGgaatagagtatttcatgtaagggttccttatgtcaagttaacaccaaatacttgtgtagaagatcatgctggaatctctgtttcacctcaactagcATATGGTAATGGTGGATTTTCGTCGCCAAATAGATGTTTTCACTCTGGTCTTGGTTCTAGTAGATGTGAGTTTTCTTCACAAGCTGGTACGAAAGACGACGATGATTTGGAGGACGGATTTTCGGAACTGGAGACTCCTTTGGGCTATGAGAGTGAAAAGTTGTTGGATTCCGATTCAGAACATTCAGATGATGCTGAGGTGCCACACAACGAACTGGAGTTATCACATGATGAGGACGAGCTTGTCACGGTTAAGAAATCGAGCCAAAAAAGGGTTTTGTCGGAATTATTTAAGGATATAATGGATGCTCCGGGACTTTCTGTTCGTACGGCGCTGGATAAGTGGGTTGAAGAGGGGAAGGAATTGAGCAGAGAGGAGATCTCACTCACCATGGCTAATCTTCGGAGGCGTAAGATGTATGGGAGAGCTTTGCAGCTCTCGGAGTGGCTTGAGTCCAAAAAGCATCTCGAATTTGTTGATAGTGATTATGCTTCTCGTCTTGATTTAATTGCCAAATTGCGTGGCTTGCATGCGGCAGAAGGTTTCATTGAGAGTATTCCAGAATCTTTTAGAGGGGAAATAGTATACCGAACTTTATTAGCTAACTGTGTTGTTCTGAACAATTTGCATAAAGCAGAGGAAATTTTTAATAAAATGAAGGATTTAGAGTTTCCTGTTACAGCATTTGCGTGCAATCAGTTGCTTTTTCTGTATAAGAGAAATGACAAAAAGAAAATAGCTGATGTGTTATTGATCATGGAACACGAGAATGTCAAACCTTCGCCTTTGACTTTTAAAATCTTAATAGACGCAAAGGGCCAGTCAAAGGATATTGCTGGAATGGATCAAATTGTTGAGAAAATGAAGGGTGAAGGCATTGAACCGGACATCCAGACAAATGCAGTTTTGGTTGGGCATTACATCTCAGCTGGGCTTGATGATAAAGCTAAAGCGTTATTGAAGAAGATGGAAGGTGAGGACTTAAGAGAGAATCGGTGGGTATGTCGAACGTTGCTTCCCCTCTATGCAAACTTGGGGATGGCCGATGAAGTTGGAAGAGTTTGGAAGGTCTGTGAGACACACCCTCGAATTGAGGATTGTTTTGCTGCAATTGAAGCCTGGGGTAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTCGAGATGATGTCAAAGAAATGGAAGCTTACGCCCAAGAACTGCTCAGTGCTACTGAAGGTTTATGCAAACCATAAGATGCTAGTAAAGGCAAAGGATCTTGTTAAGCGAATGGTGGATAGTGGATGTCGATTAGGTCCCTTGACCTGGGATGCATTGGTGAAACTATATGTCCAAGCAGGGGAAGTGGAAAAGGCAGATACTGTTCTGCAGAAGGCAATCCAGCAGAGTAAGGCGAAGCCATTATTTTCGTCCTATCTTACTATTTTACTACAGTATGCTAAGAGGGGCGACATCCATAATTCGGAAAAGATTTTCTATAAAATGAAACAAGCTGGTTATGCATCCCGACCAAGGCAGTACCAAGTTCTTATAGAAGCATATATAAATGCCAAGGTTCCAGCTTATGGGATTAGGGACAGGTTGAAAGGAGACAACATATCTCCCAACAGAACTTTGGCTAACATGTTGGTACAAGTTGATGGATTTAAGAAGAGTCCGGCTTCTGATTTGCTTGATTAA 1812 0.4012 MWALRRASFPLRNRVFHVRVPYVKLTPNTCVEDHAGISVSPQLAYGNGGFSSPNRCFHSGLGSSRCEFSSQAGTKDDDDLEDGFSELETPLGYESEKLLDSDSEHSDDAEVPHNELELSHDEDELVTVKKSSQKRVLSELFKDIMDAPGLSVRTALDKWVEEGKELSREEISLTMANLRRRKMYGRALQLSEWLESKKHLEFVDSDYASRLDLIAKLRGLHAAEGFIESIPESFRGEIVYRTLLANCVVLNNLHKAEEIFNKMKDLEFPVTAFACNQLLFLYKRNDKKKIADVLLIMEHENVKPSPLTFKILIDAKGQSKDIAGMDQIVEKMKGEGIEPDIQTNAVLVGHYISAGLDDKAKALLKKMEGEDLRENRWVCRTLLPLYANLGMADEVGRVWKVCETHPRIEDCFAAIEAWGKLKKIDEAEAVFEMMSKKWKLTPKNCSVLLKVYANHKMLVKAKDLVKRMVDSGCRLGPLTWDALVKLYVQAGEVEKADTVLQKAIQQSKAKPLFSSYLTILLQYAKRGDIHNSEKIFYKMKQAGYASRPRQYQVLIEAYINAKVPAYGIRDRLKGDNISPNRTLANMLVQVDGFKKSPASDLLD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02028 603 MobiDBLite consensus disorder prediction 99 124 - -
Car03g02028 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Car03g02028 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Car03g02028 603 Pfam PPR repeat 446 473 IPR002885 -
Car03g02028 603 Pfam PPR repeat 415 437 IPR002885 -
Car03g02028 603 Pfam PPR repeat 515 543 IPR002885 -
Car03g02028 603 Pfam PPR repeat 479 502 IPR002885 -
Car03g02028 603 PANTHER OS12G0527900 PROTEIN 63 603 - -
Car03g02028 603 Pfam Pentacotripeptide-repeat region of PRORP 240 398 IPR033443 -
Car03g02028 603 Gene3D Tetratricopeptide repeat domain 235 413 IPR011990 GO:0005515
Car03g02028 603 PANTHER OS01G0280400 PROTEIN 63 603 - -
Car03g02028 603 TIGRFAM PPR: pentatricopeptide repeat domain 239 269 IPR002885 -
Car03g02028 603 TIGRFAM PPR: pentatricopeptide repeat domain 445 474 IPR002885 -
Car03g02028 603 Gene3D Tetratricopeptide repeat domain 414 602 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02028 Car-Chr3 66472662 66476399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02028 144 543 EF-hand Containing Proteins AT1G02150 25.908 4.78e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02028 - - mtr:MTR_7g089770 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02028 03 66472662 66476399 Car04g00885 04 8664631 8667078 ECH
Car03g02028 03 66472662 66476399 Car03g02028 03 66472662 66476399 ECH