Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00504 ATGGCAAAAGCTACAGTATTTTTGGTGGGGTTTTTGATTTTGCATTGTTGGGTAGCTATGGCTGAAGCTGAGTATTTGAAATACAAAGATCCAAAGCAACCATTGAATACTAAAATTAAGGATCTTGTTGGTAGGATGAGTTTGGAAGAGAAAGTTGGTGAGATGGTTCAGATTGATCGTACTGTTGCTTCTTCTAATGTGATGAAAAAGTATTATATTGGGACTATACTAAGTGGTGGTGGAAGTGTTCCTAAGCCACAAGCTAGTGCAAAGGATTGGGTTGATATGGTGAATGAATTTCAAAAGGGTGCTTTATCCACTAGGCTTGGAATTCCAATGATATATGGAATTGATGCTGTTCATGGCCATAACAATGTCTATAAAGCAACTATTTTTCCTCACAATATTGGTCTAGGAGCTACAAGAGACCCTCAACTGGTGAAGAAGATTGGTGAGGCAACTGCCCTTGAAGCTAGAGCAACTGGAATTCCATATGTATATGCGCCTTGCATTGCGGTTTGTAGAGATCCAAGATGGGGTAGATGTTATGAAAGTTATAGTGAAGATCATACAGTAGTTCAATCTATGACTGAGATTATTCCAGGACTTCAAGGTGACATCCCTTCGAATTCGCCAAAGGGTGTTCCATTTGTTGCCGGAAACAAGAAAGTTGCAGCTTGTGCTAAGCACTTTGTTGGTGATGGTGGAACAACAAAAGGAATCAACGAGAACAACACAGTTGTAAGCAGACATGAATTGCTCAGCATTCACATGCCAGCTTACTATAACTCAATTATTCAAGGTGTGTCAACCATCATGGTTTCTTACTCAAGCTGGAATGGCGAAAAAATGCATGCTAATCGCGATTTAATCACTGGATTCCTCAAGAACACACTCCGTTTCAGGGGTTTTGTCATATCAGATTGGCAAGGAATTGACAGGATAACTTCCACTCCTCATGCTAACTACACATACTCAATCCAAACTGCAGTCAATGCTGGTATTGACATGATAATGATTCCATATAACTACACTGAGTTCATAGATGGCCTAACCTTCCTAGTGAAGAACAATGCCATACCGATGAGTCGAATCGATGATGCAGTGAAGAGAATTTTGAGAGTCAAGTTTGTTATGGGATTATTTGAGAATCCATTGGCCGATTACAGTCTTGTCGATCAGCTCGGAAGTCAGGAGCATAGAGAATTGGCAAGAGAAGCTGTGAGGAAATCATTGGTTCTATTGAAGAATGGTGAAAATGCTGATAAGCCATTGCTTCCTCTTCCTAAAAAGGCTTCAAAAATTCTTGTTGCCGGAAGCCATGCTGATAATCTAGGTTATCAATGTGGTGGATGGACTATTGAATGGCAGGGACTTAGTGGCAACTACATTACTAGTGGTACAACAATTCTCGGTGCTATAAAAAATACAGTTGACAAGGACACCAACATAATCTACAAGGAGTATCCAGATCTCGACTATGTAAAGTCAAACAACTTTTCATATGCAATAGTGGTAGTAGGAGAGAAACCATATGCTGAAACAAGTGGTGACAGCTTAAACCTAACAATTTCAAGTCATGGATATGACACAATAAACAATGTATGTGCTGGAATGAAATGGGTTGTTGTGTTAATAACTGGTAGACCTGTTGTGATTCAACCATATCTTGACAAAATTGAAGGACTAGTTGCTGCTTGGCTTCCTAGAAGTGAAGGTCACGGTGTTACTGATGTTTTGCTTGGTGATTATGGATTTAGTGGTAAGCTTTCAAGAACATGGTTTAAGAGTGTTGATCAATTACCAATGAATGTTGGTGATTCTCATTATGATCCTTTGTTTCCATTTGGGTTTGGTCTTACAACTCAACCTTATAAGGCTACTTAG 1887 0.3943 MAKATVFLVGFLILHCWVAMAEAEYLKYKDPKQPLNTKIKDLVGRMSLEEKVGEMVQIDRTVASSNVMKKYYIGTILSGGGSVPKPQASAKDWVDMVNEFQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNIGLGATRDPQLVKKIGEATALEARATGIPYVYAPCIAVCRDPRWGRCYESYSEDHTVVQSMTEIIPGLQGDIPSNSPKGVPFVAGNKKVAACAKHFVGDGGTTKGINENNTVVSRHELLSIHMPAYYNSIIQGVSTIMVSYSSWNGEKMHANRDLITGFLKNTLRFRGFVISDWQGIDRITSTPHANYTYSIQTAVNAGIDMIMIPYNYTEFIDGLTFLVKNNAIPMSRIDDAVKRILRVKFVMGLFENPLADYSLVDQLGSQEHRELAREAVRKSLVLLKNGENADKPLLPLPKKASKILVAGSHADNLGYQCGGWTIEWQGLSGNYITSGTTILGAIKNTVDKDTNIIYKEYPDLDYVKSNNFSYAIVVVGEKPYAETSGDSLNLTISSHGYDTINNVCAGMKWVVVLITGRPVVIQPYLDKIEGLVAAWLPRSEGHGVTDVLLGDYGFSGKLSRTWFKSVDQLPMNVGDSHYDPLFPFGFGLTTQPYKAT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00504 628 Gene3D - 21 396 IPR036962 GO:0004553|GO:0005975
Car02g00504 628 Pfam Glycosyl hydrolase family 3 C-terminal domain 412 621 IPR002772 GO:0004553|GO:0005975
Car02g00504 628 Gene3D - 397 623 IPR036881 GO:0004553|GO:0005975
Car02g00504 628 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 12 626 - -
Car02g00504 628 SUPERFAMILY (Trans)glycosidases 26 411 IPR017853 -
Car02g00504 628 Pfam Glycosyl hydrolase family 3 N terminal domain 48 375 IPR001764 GO:0004553|GO:0005975
Car02g00504 628 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 412 621 IPR036881 GO:0004553|GO:0005975
Car02g00504 628 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 12 626 - -
Car02g00504 628 PRINTS Glycosyl hydrolase family 3 signature 108 124 IPR001764 GO:0004553|GO:0005975
Car02g00504 628 PRINTS Glycosyl hydrolase family 3 signature 132 151 IPR001764 GO:0004553|GO:0005975
Car02g00504 628 PRINTS Glycosyl hydrolase family 3 signature 178 194 IPR001764 GO:0004553|GO:0005975
Car02g00504 628 PRINTS Glycosyl hydrolase family 3 signature 224 240 IPR001764 GO:0004553|GO:0005975
Car02g00504 628 PRINTS Glycosyl hydrolase family 3 signature 294 312 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00504 Car-Chr2 5919088 5924337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00504 11 626 Glycoside Hydrolase AT5G20950 71.266 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00504 K05349 - gmx:100819414 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00504 02 5919088 5924337 Car02g00504 02 5919088 5924337 ECH
Car02g00504 02 5919088 5924337 Car03g01788 03 63745019 63768378 ECH