Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01556 ATGTCCAAAAGCGACATGCCGGTTACTAAACCTGAGATGATGAAGCCCTATATTTGGCTTAAGACTTCGGATGGTTCTATCCAACAGGTGGAACAAGAAATTGCAATGTTTTGCCCCTTCATTTGTCAAGAAATAATACAAAAAGGCACAGGATCTTCCAAAAATTGTGCGATATGCCTTCCTGAGAAAGTCACTCCTGCGATGTTGAGCTTAGTTCTTGATTATTGCCGTTTTCATCAATTACCTGGTCGCTCAAACAAGGAGCGGAAGTCTCACGATGAAAAATTCATAAGGATGGATACCAAACGGCTCTGTGACTTGACATCTGCCGCAGACAGCCTTCAATTGAGGCCGCTGGTGGATCTTACGAGTCGTACACTTGCAAGAATAATTGAAGGAAAATCTCCAGAGGAGATTCGTGAGATATTTCATTTGCCGGATGATCTTACTGAGGAAGAGAAATTGGAGCCTCTGAGAAACTCAACTGATGATCCGAGGATAAGGCTTTTGAACCGTTTGTATGCGAAAAAAAGGAAAGAACTGAAAGAGCGTGAGAGGTTAAAGAATGTTGAATTAGAAGAAGAGCGCGTGGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAGATGATGCAGATCCAAAAGTGTCTAAACCTTCTAAGAATAAAAAGAAGAACAGAAGAAAAAAGGAGCAGCAAAAGAGCTCTTCTTCGACAGAAGCTTCTGAATTGAAAAAAGATGTTGCTGAGGAAAGTGGTCATAGTGGTGTGTTTGATGAAATTGCTGGGACCTCAAATATGCATACAGAAGATGACACTTTTGGTCATAAAGAGTTTGATGACGGAGATGTAGATGATGAGATCGATCCTGCGCTAAAGGCAAAAATTGACAGGGAAGTAGAAGATTTTGCCCGTCGTTTAAATTCTGACTGGCCAGAACGGATTCAAGAATTTTTATCACCAGGACAAGAGAGGAAGACAATGCTGTTCGCGACCAATGGGAATGGTTTTCTAAGGCGAAATATTTGA 1035 0.4106 MSKSDMPVTKPEMMKPYIWLKTSDGSIQQVEQEIAMFCPFICQEIIQKGTGSSKNCAICLPEKVTPAMLSLVLDYCRFHQLPGRSNKERKSHDEKFIRMDTKRLCDLTSAADSLQLRPLVDLTSRTLARIIEGKSPEEIREIFHLPDDLTEEEKLEPLRNSTDDPRIRLLNRLYAKKRKELKERERLKNVELEEERVDERSVDDLLSFINGDDADPKVSKPSKNKKKNRRKKEQQKSSSSTEASELKKDVAEESGHSGVFDEIAGTSNMHTEDDTFGHKEFDDGDVDDEIDPALKAKIDREVEDFARRLNSDWPERIQEFLSPGQERKTMLFATNGNGFLRRNI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01556 344 SMART skp1_3 15 116 IPR001232 GO:0006511
Car03g01556 344 Coils Coil 170 195 - -
Car03g01556 344 Pfam Skp1 family, dimerisation domain 118 154 IPR016072 GO:0006511
Car03g01556 344 PANTHER SKP1 1 273 IPR016897 GO:0006511
Car03g01556 344 PANTHER SKP1-LIKE PROTEIN 20 1 273 - -
Car03g01556 344 SUPERFAMILY POZ domain 16 80 IPR011333 -
Car03g01556 344 MobiDBLite consensus disorder prediction 208 288 - -
Car03g01556 344 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Car03g01556 344 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Car03g01556 344 SUPERFAMILY Skp1 dimerisation domain-like 91 158 IPR036296 GO:0006511
Car03g01556 344 MobiDBLite consensus disorder prediction 234 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01556 Car-Chr3 61230623 61236927 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01556 - - gmx:100809439 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01556 03 61230623 61236927 Car07g02758 07 52893693 52903560 PCT