Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01478 ATGGGTTTGTTTTTTGGGATTTTTATTGGGATAGTATTTGGCATTGCATTGATGGCTGGGTGGGAGAAAATGATGGCTTACCGAAGCGCCAGACGAATTGCAAAGGCAATTGACATTAAACTTCTTGGATCTCTCAACAGAGAAGACTTAAAGAAAATTTGTGGTGAAAATTTGCCTGAATGGATATCTTTCCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGTTGTCCAAATTGTGGCCATTTGTGGCAGATGCAGCAACTATGGTGATAAGAGAATCTGTCGAACCACTATTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGTAAGCTGTCCCTCGGAAATGTCGCACCAAAAATTGAAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATTCCTATTCAGTTGAAGGATCTTCAGGTTTTCACCATTATCCGTGTTATATTCCAACTCACTGATGAGATCCCTTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCAGTTGGTGGAAGTTTGACAGCACTTCCTGGAATTTCAGATATGATTGATGATACTGTAAACTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGTGGTATTCCTGTGGATACTAGTGAATTAGAGCTTAAGCCCCAGGGAAAGCTTAAAGTGGTTGTAATAAAAGCAAATGATCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCGTACGTAGTAATTCATATTCGCCCACTGTTTAAAGTTAAAACGAAGGTTATTGATAACAACTTGAATCCAATTTGGAATGAGGAATTTGAATTGATTGCCGAAGACAAGGAGACACAGTCACTCATTCTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAACGATTGGGAATAGCAAAATTGCCACTTATTGACATGGAAGCAGAAACTGAAAAGGACATGGAAGTAAGGCTTCTGTCATCACTTGATACACTGAAAGTGAAAGATAAGAAGGATCGAGGAACGCTGACAATAAAGATTTTCTATCATCAATTTAACAAGGAAGAACAGCTGGCCGCACTAGAAGCAGAGAAAACGATACTAGAACAAAGGAAGAAACTGAAAGAGGAAGGAGTTATAGGAAGTACAATGGACGCGCTAGACGGAGCCGCATCAGTAGTTGGGTCTGGTGTTGGAATGGTTGGTTCTGGTGTTGCTGCTGGTGCTGGACTTGTAGGAAGTGGAATTGGTGCTGGAGCTGGACTTGTAGGAAGTGGAATTGGTGCTGGAGCTAGTGTTGTGGGAAGTGGAATTGGTGCAGGAGCTGGAATTGTTGGCAGTGGGTTCGGCGCTGTTGGCAGTGGTCTTGGTGCCGTAGGCAGTGGACTGAGCAGGGCAGGAAAGTTCATGGGAAGGACAATCACAGGGCAAACTGTAACCAGAAGGAGTGGTTCGACTACCCCTGTCGCTAACTTCGAGGAGAGTGGTGGCGGTGCAAAGCCGCGCTAA 1629 0.4291 MGLFFGIFIGIVFGIALMAGWEKMMAYRSARRIAKAIDIKLLGSLNREDLKKICGENLPEWISFPVYEQVKWLNKQLSKLWPFVADAATMVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEAALVASIPIQLKDLQVFTIIRVIFQLTDEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGKLKVVVIKANDLKNMEMIGKSDPYVVIHIRPLFKVKTKVIDNNLNPIWNEEFELIAEDKETQSLILEVFDKDIGQDKRLGIAKLPLIDMEAETEKDMEVRLLSSLDTLKVKDKKDRGTLTIKIFYHQFNKEEQLAALEAEKTILEQRKKLKEEGVIGSTMDALDGAASVVGSGVGMVGSGVAAGAGLVGSGIGAGAGLVGSGIGAGASVVGSGIGAGAGIVGSGFGAVGSGLGAVGSGLSRAGKFMGRTITGQTVTRRSGSTTPVANFEESGGGAKPR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01478 542 PRINTS C2 domain signature 281 293 IPR000008 -
Car03g01478 542 PRINTS C2 domain signature 306 319 IPR000008 -
Car03g01478 542 PRINTS C2 domain signature 328 336 IPR000008 -
Car03g01478 542 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 469 537 - -
Car03g01478 542 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 480 - -
Car03g01478 542 MobiDBLite consensus disorder prediction 520 542 - -
Car03g01478 542 SMART C2_3c 265 362 IPR000008 -
Car03g01478 542 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 480 IPR045050 GO:0008289
Car03g01478 542 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 469 537 IPR045050 GO:0008289
Car03g01478 542 CDD C2 266 359 - -
Car03g01478 542 Gene3D C2 domain 259 418 IPR035892 -
Car03g01478 542 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Car03g01478 542 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Car03g01478 542 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Car03g01478 542 Pfam C2 domain 264 359 IPR000008 -
Car03g01478 542 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Car03g01478 542 Coils Coil 391 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01478 Car-Chr3 60265164 60277469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01478 266 360 Lipid Metabolism Gene Families AT4G00700 36.842 6.70e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01478 - - gmx:100785209 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01478 03 60265164 60277469 Car03g01478 03 60265164 60277469 ECH
Car03g01478 03 60265164 60277469 Car07g02641 07 50631234 50642656 PCT