Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02875 ATGCCGCAAGAACTCCTCACTATTAACATAAGCTTCCAATTTCAACCTTCGCTCTTCCTTCAAAGGGTCCCTTCACATCCACCACCGCCGCCGCTGTTAATTATCGTCTATCTCTCTTCCGTTTTCGTACCAAAGGATTACACCTGCTTTCGTGTTATGGAGCTCCCTGATTCTGAAACACAGCCCAATAGGCGTAGGAGAAAGAAATCTTCTGTATGGGAACACTTCACTGTTAAAACAACTGAACCAGGATGTGCCAGGGCCTACTGTAAAAGGTGCAAAAAATCATTTGCTTATATGAAAGATTCTAAACAATCTGGCACCAGCCATCTCAATAGACACATTTCTCTGGGAATCTGCCAGAAAAATCAACAAAACCAAACCCCGTGTTCCAAAACTGGTGCTGATCTGCAGAAGAAGCGAGAAAGAACAAAACCTTACTTTGCTTCTATCTCATTTGACCAGGAGCATTGCAATGATAAAattgccaaaatgattattttacacgattatccacttcatatagtggaacaccaaggcttcattgattttgcacgggcacttcaacctcaattcaaTCCACTGAGCTTCAATACTGTCCAAGGTGATTGTGTTGCCATTTACCTCAGAGAGAAGCAAAATCTGTTGAATCGTATTGGTGGGATTCCTGGACATGTCAACctcaccttggacttgtggacttcaaatcagacatcggcttatgtttttcttcgtgggcacttcatagatggtgattggaaattacataaTCCCATTCTTAATGTTTTCACGGTGCCATTTCCTGATTTGGATGGTTCATTAAATCAAACTATAGCGACCTGCCTAAAAGATTGGCATTTAAAGGGTCGCCTATTTGCCGTTCTATTTGATAAACTCTTCTCCAATGAGACACTGATGGGAAATATGAGAGATCAACTCTCTCTTAAGAATCCTGTGATCCTCAATGGTCAATTATTAAGACAGAATTGTTATGGTCGTGTGCTCAGTTGCCTTGCATTAGACGTTCTTTGGGAAATGAGAGACACTATTACTAAAGTTCGCAAGAGTGTGCAGTATGTGAAATCTTCAAAATCAGTTGAACAGTTGTTTTTGGAGCTTAAACGACAACTTCAAGTTCCTACTAAAATGGATCTTTTAATTGACGACAAAAATAAATGGGACACAGTCTACCATATGCTTGTTGCTGCATGTGAATTACAGGAAGTATTTGCCTGTTTTGATGCCTACGATCCCAATTACAGAATGTCCCTTACAATGGATGATTGGAAGCAGGTGGCAACTCTTTGTTCATATTTGAAGTGTTTTCACGACGCTTCTAAAATTTTAACCATCCAACCGTACCCAACATCAAACTTATTTTTCCCCGAAGTGTCAAAACTCAAGATGCAGTTGACTCATGCAGCATCGAGCCCGGATCCTTTCTGTTGTAGTTTGATTATGTCTCTGCAAGAGAAGTTCGATCAGTATTGGAGAGAAAGTTGCTTCATCTTAGCAGTTGCTGTATCCATGGATCCACGGCATAAAATGAAACTTGTGGAATCCACTTTTTCTAATATATTTGGTGAGAATGCTGAGCCATGGATAAGAACTGTCGAGGATGGTCTTCAGGAACTGTTCCTTGAATATAGTATCATACAAGTGCTTCCTTTTACCGAAACAAATTTTGATGTAGGGAATGATACTATGATGAAAACTGATGCGTTTCAAGAATGTATGTTAATGTCGATAACATTGTATTTGACTTTGGCTAGCAACGAAAGTTCAACTATAAAAGACAAACTGGTAAAACCCTAG 1815 0.3587 MPQELLTINISFQFQPSLFLQRVPSHPPPPPLLIIVYLSSVFVPKDYTCFRVMELPDSETQPNRRRRKKSSVWEHFTVKTTEPGCARAYCKRCKKSFAYMKDSKQSGTSHLNRHISLGICQKNQQNQTPCSKTGADLQKKRERTKPYFASISFDQEHCNDKIAKMIILHDYPLHIVEHQGFIDFARALQPQFNPLSFNTVQGDCVAIYLREKQNLLNRIGGIPGHVNLTLDLWTSNQTSAYVFLRGHFIDGDWKLHNPILNVFTVPFPDLDGSLNQTIATCLKDWHLKGRLFAVLFDKLFSNETLMGNMRDQLSLKNPVILNGQLLRQNCYGRVLSCLALDVLWEMRDTITKVRKSVQYVKSSKSVEQLFLELKRQLQVPTKMDLLIDDKNKWDTVYHMLVAACELQEVFACFDAYDPNYRMSLTMDDWKQVATLCSYLKCFHDASKILTIQPYPTSNLFFPEVSKLKMQLTHAASSPDPFCCSLIMSLQEKFDQYWRESCFILAVAVSMDPRHKMKLVESTFSNIFGENAEPWIRTVEDGLQELFLEYSIIQVLPFTETNFDVGNDTMMKTDAFQECMLMSITLYLTLASNESSTIKDKLVKP 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02875 604 ProSiteProfiles Zinc finger BED-type profile. 67 127 IPR003656 GO:0003677
Car01g02875 604 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 54 575 - -
Car01g02875 604 SUPERFAMILY Ribonuclease H-like 223 553 IPR012337 -
Car01g02875 604 PANTHER BED FINGER-RELATED 54 575 IPR045259 -
Car01g02875 604 SMART bed5 67 123 - -
Car01g02875 604 SUPERFAMILY beta-beta-alpha zinc fingers 70 118 IPR036236 -
Car01g02875 604 Pfam Domain of unknown function (DUF4413) 453 549 IPR025525 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02875 Car-Chr1 53851487 53856209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02875 - - gmx:106795554 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02875 01 53851487 53856209 Car01g02875 01 53851487 53856209 ECH
Car01g02875 01 53851487 53856209 Car06g02333 06 25060625 25064119 PCT