Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g02870 | ATGTCTGCTGCGGTGTGTGGAAGCAAGAGATCTTTCTTCGAAGACCTTCCTCCTTCACCCCCAGTTTCAAAGAGGATTCGTTGTTCTTCATCACCAATTCGTCTTTCTCTTCCAACCCTCATCGATCACCTTCGATCCCTTTTTCCTCATATGGAAGATCAGATCATTGAAAGAGCACTTCAGGAATGTGGCAATGATTTAGATGCTGCTATCAAGAGCCTGCACGGGCTTTGCTTGGGATCTGCAGATGAAAATTCTGTTAATGTTCCACAACTTGATGCTACCGTTGAAACAGGTGTTTTTGCAGATAATGGGGATGCTTCTGCTTCTGGGAATCAGCCAGCTGAAAACAATCTTCCCGCTGATGGACCAGAATGGATTGACTTATTTGTTAGGGAGATGACATGTGCTACTAGTGTTGATGATGCCAGAGCCCGTGCTGCTAAATTGCTTGAGGTTTTGGAGAAATCCATCAGCGCACATGCAAGTTCTGGGGCAATAACTGATCTTCAAAGGGAAAATTTGATGTTGAAATATCAAGTTGAACTCTTGACAAAGGAGAGAAATTGTTTCAAAAGTGCTTTTAGAATCCAGCTTGAACGCCTTTCTGATTATGAGGATAAAGAGAGAGAGTTGCAGCAGTTGAAGCAGTTGGTGTCTCAATACCAGGAACAGATCAGAACTCTTGAGGTTAACAACTATGCTCTGCGAATGCATCTGAATCAGGCACAAAAATACAACCCTTTTCCTGGAAGTTTCCCTCCTGATGGCTTCTAA | 777 | 0.4324 | MSAAVCGSKRSFFEDLPPSPPVSKRIRCSSSPIRLSLPTLIDHLRSLFPHMEDQIIERALQECGNDLDAAIKSLHGLCLGSADENSVNVPQLDATVETGVFADNGDASASGNQPAENNLPADGPEWIDLFVREMTCATSVDDARARAAKLLEVLEKSISAHASSGAITDLQRENLMLKYQVELLTKERNCFKSAFRIQLERLSDYEDKERELQQLKQLVSQYQEQIRTLEVNNYALRMHLNQAQKYNPFPGSFPPDGF | 258 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g02870 | 258 | Pfam | CUE domain | 40 | 73 | IPR003892 | GO:0043130 | |
| Car01g02870 | 258 | Gene3D | - | 39 | 79 | - | - | |
| Car01g02870 | 258 | Coils | Coil | 205 | 232 | - | - | |
| Car01g02870 | 258 | PANTHER | UBIQUITIN SYSTEM COMPONENT CUE PROTEIN | 1 | 258 | - | - | |
| Car01g02870 | 258 | SUPERFAMILY | UBA-like | 39 | 81 | IPR009060 | GO:0005515 | |
| Car01g02870 | 258 | CDD | CUE | 40 | 74 | - | - | |
| Car01g02870 | 258 | PANTHER | UBIQUITIN SYSTEM COMPONENT CUE PROTEIN | 1 | 258 | - | - | |
| Car01g02870 | 258 | ProSiteProfiles | CUE domain profile. | 36 | 82 | IPR003892 | GO:0043130 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g02870 | Car-Chr1 | 53827357 | 53829806 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g02870 | - | - | gmx:100815998 | 437.573 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car01g02870 | 01 | 53827357 | 53829806 | Car01g02870 | 01 | 53827357 | 53829806 | ECH | |
| Car01g02870 | 01 | 53827357 | 53829806 | Car06g02335 | 06 | 25099095 | 25103103 | PCT |