Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g02823 | ATGTGGCGTAGACTTTTCTCTTCTTCTCACCTCAAAACCCTTTCTTCTTCTAATCTCTCTCATTCTCATCCTCGATCCGCCGTTGCCGGACTCCGATTCGTTGATCTCAACCGCCACGTTGCCACTCAATCAGCTGGTTCCATCAAAAAGAGGGTTGAGGATGTTGTCCCAATTGCTACCGGTCATGAACGTGAGGAGATTCAGGCTGAGCTTGAGGGAAGGGATATTCTTGAAATAAACCATCCAGAAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAGGTCTTTCTATAGCAGAAGGATAGTTGGATGCCCAGGTGGTGAAGGTGAGGATGAGCATGATGTCGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCAGTGTGTGCACAGTATTTTGAGCTTGAAGTGGTAGGACCTGGCGGTGATCCTTATGGACATGGCGATCACGATCATCATTGA | 474 | 0.481 | MWRRLFSSSHLKTLSSSNLSHSHPRSAVAGLRFVDLNRHVATQSAGSIKKRVEDVVPIATGHEREEIQAELEGRDILEINHPEGPFGTKEAPAVVRSFYSRRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFELEVVGPGGDPYGHGDHDHH | 157 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g02823 | 157 | ProSiteProfiles | Cytochrome c oxidase subunit Vb, zinc binding domain profile. | 47 | 146 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 | |
| Car01g02823 | 157 | Gene3D | Cytochrome c oxidase, subunit Vb | 48 | 142 | IPR036972 | GO:0005740|GO:0005751|GO:0006123 | |
| Car01g02823 | 157 | PANTHER | CYTOCHROME C OXIDASE SUBUNIT 5B | 1 | 157 | - | - | |
| Car01g02823 | 157 | PANTHER | CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL | 1 | 157 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 | |
| Car01g02823 | 157 | SUPERFAMILY | Rubredoxin-like | 48 | 145 | - | - | |
| Car01g02823 | 157 | CDD | Cyt_c_Oxidase_Vb | 49 | 144 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 | |
| Car01g02823 | 157 | Pfam | Cytochrome c oxidase subunit Vb | 58 | 147 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g02823 | Car-Chr1 | 53491066 | 53494325 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g02823 | K02265 | - | gmx:100780886 | 201.445 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car06g02372 | 06 | 25767851 | 25773148 | Car01g02823 | 01 | 53491066 | 53494325 | ECH | |
| Car01g02823 | 01 | 53491066 | 53494325 | Car01g02823 | 01 | 53491066 | 53494325 | ECH | |
| Car01g02823 | 01 | 53491066 | 53494325 | Car06g02372 | 06 | 25767851 | 25773148 | PCT |