Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02812 ATGGAAGGAACTGATATATACAGAGCAACTAATAGTTTAAGAGCGAGAAGTTCAACTGTTTGGAGAAACAGTGGTGTTGAGGTTTTCTCAAAGTCATCTCGTGAAGAAGACGATGAAGAAGCTCTTAAATGGGCTGCACTTGAAAAACTACCTACTTACAACCGTTTGAGAAAAGGCTTGTTGACTACTTCTCATGGTGCAGCTAATGAAATTGATGTCACTGATCTTGATTTTCAAGAAAAACAGAAACTTTTGGAGAGATTGGTTAAGGTTGCTGAAGAAGATAATGAAGGGTTTTTGTTGAAACTCAAGGAACGAGTTGATAGAGTTGGACTTGATCTTCCAACAATTGAAGTTCGATATGAGCACTTGAAAATTGATGCTGAAGCTTTTGTGGGAAGTAGAGCTTTGCCTAGTTTCATTAATGCTGCTACTAATGTTGTAGAGGGTTTATTGAATGTGCTCCATATTGTCCCAAGCAAAAAGAGACATGTGGCAATTCTTAAAGATGTTAGTGGTGTTATCAAACCTCGAaggatgacactacttttaggtcctcctggttcaggaaagaccacactacttttggctttatcaggaaagcttgatccaagtctccagctatctgggagtgtgacttacaacggacatggactgaatgaatttgtacctcaaagaactgctgcttatatcagccagcatgatgttcatatcggagaaatgaccgtgagagaaaccttggctttctccgcaaggtgccaaggagttggatcacgttatgacatgctatctgagttgtctagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtctacatgaagGCAATTGCAACTGAAGGTCAGAAGTATAGCATTTCAACGGATTATGTACTCAAGatattgggtttggatatatgtgctgataccatggtgggagatgaaatgttgaggggtatctctggaggacaaaggaagcgtgtcactacaggagagatgttggttggacctgcgaatgcattgttcatggatgagatatctaccggacttgacagctccacaacttttcagatcgtgagctccctgaggcaatatgttcacattatgaatggcactgcagttatatcattgctccagccagcacctgagacttacgatctttttgatgacattatcttaatctctgatggccaagttgtgtaccatggcccccgtgaatatgttctcgacttttttgaatcaatgggtttcaaatgtcctgataggaaaggtgttgctgattttcttcaagaagtaacttcaagaaaggatcaagcacagtactgggtgcgcagagaccaaccatacagatttgtaactgttactcaatttgctgaggcatttcaatcattccatattggtaggaaacttactgaggagctttctgttccattcgacaagacgaaaagccatccagctgctttaaccaccaaagagtatggtcttaacaagaaggagctcttaaaggctaacttttcaagagagtatttgctcatgaaaaggaattcatttgtttacatcttcaagctaactcagctttttatcatggcattgatagcaatgacactgttttttcggactgagatgcatcgcaataatcaggacgatgcgggtgtttatgctggtgctttgtttttcacactagtgacgattatgttcaatggaatgtccgagatttctatgaccattgctaagcttcctgttttctacaagcaaagagaccttctcttttatccctcatgggcatatgctattccttcatggattctcaagattcctgttacaatggttgaagttgctctttgggtgtttctcacatactatgttattggatttgatccaaatattgggagGTTTTTCAAGCAGTTCCTTATACTGTTTTTCACGAGTCAGATGGCTTCTGGATTGTTCCGAGCCATCGCAGCATTAGGTAGAAACATGATTGTAGCAAACACATTTGGGTCCTTTGCAGTTCTCACACTTCTTGCATTGGGTGGCTTCATTCTCTCAAGAAaggatatcaaaagctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggaacaattggCACAATGCTACTTTTGATTTGGGAAAATTATATCTCGACAACCGTGGGTTCTTCCCACATGCATATTGGTATTGGATAGGCATTGGGGGATTGGTTGGTTTTGTGTTCCTTTTCAATGCATTGTTTGGAGTGGCTCTTGCTGTACTGGGCCCATTTGATAAACCTCAAGCTACAATAACTGAAGATTCAGAAGAAGTTGTTGAAGAAGTTGAATTACCACGCATAGAAAGTTCAGGAAGAGGCGATTCTGTTACAGAGTCCAGCCACGGAAAGAAAAAGGGAATGGTTCTTCCATTTGAACCACACTCTATCACTTTTGATGATATTGTATACTCTGTTGACATGCCAGCGgaaatgaaggagcaaggtgttcaagaggatagattagtgcttttgaagggcgtgagcggcgcatttaggcctggtgttctcacagctttgatgggtgtaagtggagctggtaagacaactttgatggatgttctggccggtaggaaaaccggtggatatattgatggaagcatcaaggtttcgggataccctaaaaagcaagaaacatttgctagaatctctggctactgtgagcagaatgatatccattcacctcatgttacagtttatgagtccttgctttactcagcatggcttcgTTTACCTTCAGGAGTTGATTCCAATACCAGAAAGatgttcattgacgaagtcatggacctggtggagctgaactcattaaggaactccctggttggtttgcctggtgtgagtggcctctcaactgaacaacggaagaggctgactattgcagttgaactagtggctaatccatctataattttcatggatgagcctacttctggtttagatgcaagagcagctgcaatcgttatgagaaccgtaaggaacacggtggacacgggaagaacagttgtgtgtaccatccatcagcctagcattgacatattcgaagcgtttgacgagctattcctcatgaagcgtggaggacaagaaatatacgttggaccactgggtcgccattctactcatttgatcaagtatttcgagagtattgaaggggtgagcaaaatcaacaacggatataacccagcaacatggatgttggaagttacaactacagcacaagaacataatttgggagttgactttactgactattacaaaaattctgatctatataggagaaacaagcagcttatacaagaattgggccagcctgctcctggttcaaaagatcttcatttccctacgcaattctcgcagtctttcttggtccagtgccaagcctgcctatggaaacaacgttggtcatattggcgtaacccaccatacactgctgtgaggtttttcttcactacattcatagccttgatgtttggaacaattttctgggaCCTTGGTGGCAAACActcaagtagacaagatctgttgaatgctgtgggttcaatgtataccgctgttctcttccttggagtacaaaattcttcttctgtgcagccagtggtcgcagttgaaagaactgtattttatagagaaaaggctgcaggaatgtattctgccttaccctatgcattttcacagattttggtagagttaccttacgtctttgcccaagccgattcgtcgtcccgagacccagcattccaatatggtggagatggtactattgggcttgtccagttgcttggaccatttatggattggttgcatctcaatttggagatttaa 3903 0.1173 MEGTDIYRATNSLRARSSTVWRNSGVEVFSKSSREEDDEEALKWAALEKLPTYNRLRKGLLTTSHGAANEIDVTDLDFQEKQKLLERLVKVAEEDNEGFLLKLKERVDRVGLDLPTIEVRYEHLKIDAEAFVGSRALPSFINAATNVVEGLLNVLHIVPSKKRHVAILKDVSGVIKPRRMTLLLGPPGSGKTTLLLALSGKLDPSLQLSGSVTYNGHGLNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDIDVYMKAIATEGQKYSISTDYVLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVSSLRQYVHIMNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFKCPDRKGVADFLQEVTSRKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGRKLTEELSVPFDKTKSHPAALTTKEYGLNKKELLKANFSREYLLMKRNSFVYIFKLTQLFIMALIAMTLFFRTEMHRNNQDDAGVYAGALFFTLVTIMFNGMSEISMTIAKLPVFYKQRDLLFYPSWAYAIPSWILKIPVTMVEVALWVFLTYYVIGFDPNIGRFFKQFLILFFTSQMASGLFRAIAALGRNMIVANTFGSFAVLTLLALGGFILSRKDIKSWWIWGYWISPLMYGQNALMANEFLGNNWHNATFDLGKLYLDNRGFFPHAYWYWIGIGGLVGFVFLFNALFGVALAVLGPFDKPQATITEDSEEVVEEVELPRIESSGRGDSVTESSHGKKKGMVLPFEPHSITFDDIVYSVDMPAEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKVSGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSGVDSNTRKMFIDEVMDLVELNSLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSTHLIKYFESIEGVSKINNGYNPATWMLEVTTTAQEHNLGVDFTDYYKNSDLYRRNKQLIQELGQPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTIFWDLGGKHSSRQDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFYREKAAGMYSALPYAFSQILVELPYVFAQADSSSRDPAFQYGGDGTIGLVQLLGPFMDWLHLNLEI 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02812 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 1061 IPR027417 -
Car01g02812 1300 CDD ABCG_PDR_domain2 822 1060 IPR034003 -
Car01g02812 1300 Pfam ABC-2 type transporter 383 435 IPR043926 GO:0140359
Car01g02812 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 152 425 IPR003439 GO:0005524
Car01g02812 1300 Gene3D - 153 460 IPR027417 -
Car01g02812 1300 Gene3D - 839 1069 IPR027417 -
Car01g02812 1300 CDD ABCG_PDR_domain1 150 407 IPR034001 -
Car01g02812 1300 Pfam ABC-2 type transporter 504 716 IPR013525 GO:0016020|GO:0140359
Car01g02812 1300 Pfam ABC-2 type transporter 1151 1264 IPR013525 GO:0016020|GO:0140359
Car01g02812 1300 Pfam Plant PDR ABC transporter associated 723 780 IPR013581 -
Car01g02812 1300 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 8 1264 - -
Car01g02812 1300 Pfam ABC transporter 168 350 IPR003439 GO:0005524
Car01g02812 1300 Pfam ABC transporter 853 1005 IPR003439 GO:0005524
Car01g02812 1300 PANTHER ATP-BINDING CASSETTE TRANSPORTER 8 1264 - -
Car01g02812 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 425 IPR027417 -
Car01g02812 1300 SMART AAA_5 862 1054 IPR003593 -
Car01g02812 1300 SMART AAA_5 177 409 IPR003593 -
Car01g02812 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 825 1077 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02812 Car-Chr1 53394042 53400469 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02812 K08711 - gmx:100793825 2256.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02812 01 53394042 53400469 Car06g02383 06 25942571 25952810 PCT