Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02752 ATGAAGgctactgcaatggaaggaacagaaagtagtctcattactgactatactctcaaaatattggggcttgatatatgcagagataccattgttggtgatgaaatgagaagaggcatttctggtggtcaaaagaagcgtgtaacaactggtgagatgattgttgggcccacaaaaacattgtttatggatgagatatcaacggggcttgatagttccacaacatatcagatagtgaaatgtttgcaacaaattgtacacctcactgaagcaaccatcttcatgtctctacttcaacctgctcctgagactttcgatctttttgatgatattgtattgatatcagagggtcagatagtataccagggtccacgtcaccatgtccttccattctttcaatcctgtggatttaaatgtcctgacagaaaaggaactgcagatttcttgcaagaggttacttcaaggaaagaccaagaacaatattgggcaaacagagacatacaataccgttacataacagtaaccgaatttgcaaacaaattcaaagaattccacataggaacacagcttcaaaacgaattatctataccatttgacaagtcaacatcacacagagcatcacttgttttcaagaaatacacagttccaacaatgggacttctaaaagcatgttgggacaaagaatggcttttgattaaaagaaactcttttgtgtatatattcaagacagttcaaatatgcattattgctgttatatcagcaacagtgttcttaagaagtgaaatgcatagaaggaatgaggaggatgctgctgtttatattggtgctattttgtttactatgatcatgaatatgtttaatggtttttctgaattaccactcacaattgcaaggcttcctgtgttttataagcatagagatcacctttttcatcctccttggacttataccttacccaatttttttctaaggatacctatttccatttttgaggctattgtttgggttcttattacatattacactattggatttgcacctgaagctagcagGTTCTTCAAGCACTTGTTGTTGGTGTTTCTTGTTCAACAAATGGCAGCTGGTATGTTTAGGGTGATATCTGGAGTTTGTAGGACAATGATCATTTCCAACACTGGTGGATCCCTCGTGCTCCTTCTGGTTTTCTTACTTGGAGGCTTCATCCTTCCTAAACGTGACATTCCAAATTGGTGGGTGTGGGGCTATTGGATTTCTCCACTGTCATATGCTTTCAATGCTTTTGCTGTGAATGAAATGCTTGCTCCAAGATGGAGTAAACCGTCTTCAGATGGTTCAACTTCATTAGGTGTGGCCACATTAAATAACTTCGATGTTTTTAATGATAAACAATGGTATTGGATTGGTGCATCAGCACTTCTGTGTTTCGCTATTCTATACAATGTTCTCTTCACCTTTGCACTAATGTACCTTAATCCTGTTGGAAAGAAACAAGCAATTATATCAGAAGAAAAAGCAAGTAAAATGGAAGGTGATGGAAATAACACAAGTAAATATGAAAGTAGTGGAATAAGAAGTGATGATCGAATACTTGAATCAGCCAATGGAGTTGCACCAAAGAGAGGAATGGTTCTTCCTTTTCGACCACTTGCAATGTCTTTTGATTGTGTTAATTACTATGTGGACATGCCAGCAgaaatgaaagagcaaggagtaacaaatgataggctacaattgcttagggaagtaactggtgcttttaggcctggagttctaactgctttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaaaacaggtggttacattgaaggagattttagaatctctggtttccctaagaatcaagaaacttttgcaagaatttctggatactgtgaacaaactgatatccattcaccacaagttactgtcagagaatctgtcatttactcagctttccttagattatctagggaagtaaataAGGAGGAAAAAATGagatttgtggatgaggtaatggatttggtagagctgaataatttgagagatgctatagttggacttccaggtgttacagggttgtcaactgaacaaagaaaaaggctaacaatagctgttgagcttgttgctaatccttcaatcattttcatggacgaacctacttcaggtcttgatgcaagagcagcagcaattgttatgaggacagtgagaaacactgttgacactggaagaacagttgtctgcacaattcatcaacctagtattgatatctttgaagcctttgatgagttgcttttgttgaagagaggagggcaagtgatatactcaggaccattgggaagaaattcacacaagattatagaatattttgagGAAATTCCAGGGGTCTCAAAAATTAAggataagtacaaccctgctacatggatgttagaggtaagctctacagcatctgaagttaggcttggaatggactttgccgaatactacaaaacatcatcattatatcaGAGAAACAAAGCTCTTGTAAGTGAGTTAAGTACATCTCCTATTGGAGCAAAAGATCTATACTTCACCACTCAGTTTTCTCAATCCACTTGGGGACAATTTAAATCATGTATATGGAAGCAGTGGTTGACATATTGGAGGAGTCCAGATTACAATCTTGTTAGAATTTTCTTCACCTTGGCTGCAGCTCTCATGGTGGGGACAGTATTTTGGAGAGTTGGCAAGAAAAGGGACAGCTCAGCTGACTTGAACATGATTATAGGAGCATTGTATGGTTCTGTATTTTTTGTTGGTGTCAACAATTGCCAAACTgttcaacctgtagtatccgttgaaagaactgttttctatagagaaagagctgctggaatgtattctgctttaccttatgctattgctcagGTTGTTTGTGAAATACCGTATGTGTTTTTTGAAACTATATGTTTCTCATTCATAGTGtattctatggtgggctttgaatggaaagtagagaaggtactttggttcttctttgtgagcttcttctccttcttgtacttcacgtattatgggatgatgacagtttccataacaccaaatcaccaagtagcatcaatctttggggcagcattctatggactcttcaatctcttttctggtttctttattccaagaccaaaaattcctaaatggtgggtttggtattattggatttgtccaatggcatggacagtgtatggattaattgtgtcacaatatagagatgtgacaaaaggcataaatgtgcctggagagtctcatgaaattccaatcaataagtatattgaagaacattatggtttcaaaaatgatttcatggggacagttgctgctgttttgattgctttcgctgtattttttgcctttgtatttgccttctgcatcaaagcactgaacttccaaactagataa 3462 0.1176 MKATAMEGTESSLITDYTLKILGLDICRDTIVGDEMRRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATIFMSLLQPAPETFDLFDDIVLISEGQIVYQGPRHHVLPFFQSCGFKCPDRKGTADFLQEVTSRKDQEQYWANRDIQYRYITVTEFANKFKEFHIGTQLQNELSIPFDKSTSHRASLVFKKYTVPTMGLLKACWDKEWLLIKRNSFVYIFKTVQICIIAVISATVFLRSEMHRRNEEDAAVYIGAILFTMIMNMFNGFSELPLTIARLPVFYKHRDHLFHPPWTYTLPNFFLRIPISIFEAIVWVLITYYTIGFAPEASRFFKHLLLVFLVQQMAAGMFRVISGVCRTMIISNTGGSLVLLLVFLLGGFILPKRDIPNWWVWGYWISPLSYAFNAFAVNEMLAPRWSKPSSDGSTSLGVATLNNFDVFNDKQWYWIGASALLCFAILYNVLFTFALMYLNPVGKKQAIISEEKASKMEGDGNNTSKYESSGIRSDDRILESANGVAPKRGMVLPFRPLAMSFDCVNYYVDMPAEMKEQGVTNDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDFRISGFPKNQETFARISGYCEQTDIHSPQVTVRESVIYSAFLRLSREVNKEEKMRFVDEVMDLVELNNLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKIIEYFEEIPGVSKIKDKYNPATWMLEVSSTASEVRLGMDFAEYYKTSSLYQRNKALVSELSTSPIGAKDLYFTTQFSQSTWGQFKSCIWKQWLTYWRSPDYNLVRIFFTLAAALMVGTVFWRVGKKRDSSADLNMIIGALYGSVFFVGVNNCQTVQPVVSVERTVFYRERAAGMYSALPYAIAQVVCEIPYVFFETICFSFIVYSMVGFEWKVEKVLWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFGAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPMAWTVYGLIVSQYRDVTKGINVPGESHEIPINKYIEEHYGFKNDFMGTVAAVLIAFAVFFAFVFAFCIKALNFQTR 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02752 1153 Pfam ABC-2 type transporter 99 152 IPR043926 GO:0140359
Car01g02752 1153 Pfam ABC-2 type transporter 760 821 IPR043926 GO:0140359
Car01g02752 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 788 IPR027417 -
Car01g02752 1153 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 551 804 IPR003439 GO:0005524
Car01g02752 1153 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 1153 - -
Car01g02752 1153 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 1 1153 - -
Car01g02752 1153 CDD ABCG_PDR_domain2 548 786 IPR034003 -
Car01g02752 1153 Pfam Plant PDR ABC transporter associated 437 500 IPR013581 -
Car01g02752 1153 Pfam ABC transporter 579 731 IPR003439 GO:0005524
Car01g02752 1153 Gene3D - 565 799 IPR027417 -
Car01g02752 1153 SMART AAA_5 588 780 IPR003593 -
Car01g02752 1153 Pfam ABC-2 type transporter 221 431 IPR013525 GO:0016020|GO:0140359
Car01g02752 1153 Pfam ABC-2 type transporter 877 1090 IPR013525 GO:0016020|GO:0140359
Car01g02752 1153 Gene3D - 4 183 IPR027417 -
Car01g02752 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 154 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02752 Car-Chr1 52903540 52910603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02752 K08711 - gmx:100801386 1983.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02752 01 52903540 52910603 Car01g02752 01 52903540 52910603 ECH
Car01g02752 01 52903540 52910603 Car07g03162 07 58866498 58877662 PCT