Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02724 ATGAACGGTGGCGACGAGGTTGTACCAGCTCCGGCGGGTCCACCTTCCCCTCTGGAGTGGAAATTCTCTCAGGTCTTCGGTGAACGCACGGCTGGTGAAGAGGTTCAAGAAGTGGACATAATTTCTGCTATCGAATTTGACAAGTCTGGGGATCACCTTGCTACTGGTGATCGCGGTGGTCGAGTGGTTCTCTTTGAGAGGACAGATACAAAAGATCATGGCGAATCTAGAAGGGATTCAGAGAGGATGGACTATTCTATCAGCAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTACCTTAAGAGTTTGGAGATAGAAGAGAAAATAAACAAAATCAGATGGTGCCAAATAGCTAATGGTGCCCTTTTCCTTCTCTCGACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGATATGAATGTTGACCCTTCGAAAACAATGGGAAATGGCGGTGTTGCTAGTTCAAGTAATTCAGGTAGTCCTAGGCCATGCCTTGCAAATGGAGGATATTCAGATTCGGATAGATCATACAATTATCTAAGCACCGACTTCTCATTTCCACCGGGAGGCATACCATCACTAAGATTACCCGTGGTAGTAAGTAGCCATGAAACCAGCTTGGTGGCTCGATGTCGTAGAGTTTATGCCCATGCGCATGATTATCATATCAATTCTATTTCAAACAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATAAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCCGCAAACATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTAATTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCAGGATCCAGATCATTTTTCACAGAGATTATTGCTTCCATATCTGACATAAAATTTGGAAAGGATGGAAGATACATACTGAGTCGTGATTACATGACTTTAAAGTTATGGGACATTAATATGGATTCAGGTCCTGTTGCAACTTTCCAGGTTCATGAGTATCTAAGACCTAAGCTTTGTGATCTGTATGAAAACGATTCGATTTTTGATAAGTTCGAGTGTTGTCTGAGTGGTGACGGATTGCGGGTAGCAACTGGTTCTTACAGGTATGTGATACAAACTTAA 1290 0.4194 MNGGDEVVPAPAGPPSPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRRDSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISDMNVDPSKTMGNGGVASSSNSGSPRPCLANGGYSDSDRSYNYLSTDFSFPPGGIPSLRLPVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYRYVIQT 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02724 429 Pfam WD domain, G-beta repeat 229 265 IPR001680 GO:0005515
Car01g02724 429 MobiDBLite consensus disorder prediction 158 185 - -
Car01g02724 429 PIRSF PPA2_B55 11 429 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 4 426 - -
Car01g02724 429 Gene3D - 213 428 IPR015943 GO:0005515
Car01g02724 429 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 4 426 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 Gene3D - 36 201 IPR015943 GO:0005515
Car01g02724 429 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Car01g02724 429 MobiDBLite consensus disorder prediction 160 182 - -
Car01g02724 429 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 235 249 IPR018067 -
Car01g02724 429 SUPERFAMILY WD40 repeat-like 39 424 IPR036322 GO:0005515
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 378 403 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 237 264 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 265 292 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 293 321 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 404 429 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 322 349 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 350 377 IPR000009 GO:0000159|GO:0019888
Car01g02724 429 SMART WD40_4 276 316 IPR001680 GO:0005515
Car01g02724 429 SMART WD40_4 105 145 IPR001680 GO:0005515
Car01g02724 429 SMART WD40_4 226 265 IPR001680 GO:0005515
Car01g02724 429 SMART WD40_4 31 66 IPR001680 GO:0005515
Car01g02724 429 SMART WD40_4 335 373 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02724 Car-Chr1 52663932 52670909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02724 K04354 - gmx:100790801 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03126 07 58466988 58474261 Car01g02724 01 52663932 52670909 ECH
Car01g02724 01 52663932 52670909 Car01g02724 01 52663932 52670909 ECH
Car01g02724 01 52663932 52670909 Car07g03126 07 58466988 58474261 PCT