Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02701 ATGGCCATCTCTCCAATTTTATTGGTGACTTTCTTTTCTCTCATTTATGGAAATTATGTTATTCCAATTGAAGCTACTCATCATGTTTATACAACTCTTGATGAGAGTTTATCTTCTGAATATTCCTCAAATCAACCTTATAGAACTGCCTATCACTTTCAACCTCTCAAAAATTGGATTAATGACCCCAATGGACCAATGAGATATGGAGGACTATATCATCTATTTTACCAATACAATCCAAAAGGTGCTGTTTGGGGAAACATTGTGTGGGCCCATTCAGTATCAAAAGATCTTGTGAATTGGACACCATTGGATCATGCCATCCACCCATCTCAACCATCAGATATCAATGGTTGTTGGTCAGGCTCAGCCACTTTACTTCCTGGTGGCAAACCAGTAATTTTATACACAGGAATTGATCCAAATAATCACCAAGTTCAAAATTTAGCCATACCCAAAAACATTTCTGACCCATTACTTAGGGAATGGAAAAAATCACCAAAAAATCCATTAATGCAACCTACTTTTTCTAATAAAATTAATTCAAGTTCATTTAGAGATCCAACCACTGCTTGGTTAGGAAAAGATGGGTTTTGGAGGGTATTAATTGGAAGTAAAATAAATACTAAGGGAATGGCAATTTTGTACAAAAGTAAAAATTTTGTTAATTGGGTTGAAGCCAAACACCCTTTACATTCAGCTGAAGGAACAGGAATGTGGGAGTGTCCTGATTTTTATCCAGTGTTGAATCAAAATAAATTAACAATTGGTGTTGATACTTCTGTGAATGGTGATTATGTTAAGCATGTGCTTAAGGTTAGTTTGGATGATACAAAACATGATCATTATTTGATTGGAACTTATGATGCTGTTAAGGATATTTTTGTTCCTGATAATCATGGTTTGGAGGGTAACCACCAATACTTTGAGTTGAGATATGATTATGGAAAATATTATGCATCAAAAACTTTTTTTGATGATGGGAAGAATAGAAGGGTCTTGTTGGGTTGGGTTAATGAATCCTCAAGTGTTGCTGATGATGTCAAGAAAGGATGGTCTGGAATCCATACTATTCCAAGGGCTATCTGGCTTCATAAATCAGGGAAACAGTTGGTGCAATGGCCGGTGAAGGAAATTGAAAATCTACGTATGAATCCAGTCAATTGGCCCACCAAGGTTATCAAAGGAGGTGAACTAATTCCAATTACTGGTGTTAATCCAGTACAGGCTGATGTTGAAATTTCATTTGAAGTGAATGATGTTGGAAAGGCTGAAATATTGGACCATATGATAGATCCCCAAATTCTGTGTAGTCAAAAGGGTGCAGCCGTAAAAGGGAGGGTAGGACCATTTGGTCTGCTAGTAGTTGCTTCTAAAGGTTTACAAGAGTATACAGCAGTGTTTTTTAGAATATTCAGATATCAACATAAAAATTTGGTTCTCATGTGCAGCGACCAAAGCAGGTCATCTTTGAATAAAGAGAATGATATGACTACATATGGGACTTTTGTGGACGTGGACCCACTTCATGAGAAGCTATCACTAAGAAGTTTGATTGATCATTCTGTGGTGGAGAGTTTTGGTGGAGAAGGAAGGGCTTGCATCACAGCCAGAGTTTATCCCACATTAGCAATTCATGATAAGGCTATGTTATACGCTTTCAATAATGGAACTTCCGCTGTTAAGATCACAAGATTGAATGCTTGGAGCATGAAGAAAGCAAAAATCAACTGA 1737 0.369 MAISPILLVTFFSLIYGNYVIPIEATHHVYTTLDESLSSEYSSNQPYRTAYHFQPLKNWINDPNGPMRYGGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIHPSQPSDINGCWSGSATLLPGGKPVILYTGIDPNNHQVQNLAIPKNISDPLLREWKKSPKNPLMQPTFSNKINSSSFRDPTTAWLGKDGFWRVLIGSKINTKGMAILYKSKNFVNWVEAKHPLHSAEGTGMWECPDFYPVLNQNKLTIGVDTSVNGDYVKHVLKVSLDDTKHDHYLIGTYDAVKDIFVPDNHGLEGNHQYFELRYDYGKYYASKTFFDDGKNRRVLLGWVNESSSVADDVKKGWSGIHTIPRAIWLHKSGKQLVQWPVKEIENLRMNPVNWPTKVIKGGELIPITGVNPVQADVEISFEVNDVGKAEILDHMIDPQILCSQKGAAVKGRVGPFGLLVVASKGLQEYTAVFFRIFRYQHKNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRSLIDHSVVESFGGEGRACITARVYPTLAIHDKAMLYAFNNGTSAVKITRLNAWSMKKAKIN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02701 578 PANTHER CELL-WALL INVERTASE 2 578 - -
Car01g02701 578 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 578 - -
Car01g02701 578 Pfam Glycosyl hydrolases family 32 C terminal 379 571 IPR013189 -
Car01g02701 578 SUPERFAMILY Arabinanase/levansucrase/invertase 42 377 IPR023296 -
Car01g02701 578 Gene3D Glycosyl hydrolase domain; family 43 57 386 IPR023296 -
Car01g02701 578 Pfam Glycosyl hydrolases family 32 N-terminal domain 52 376 IPR013148 -
Car01g02701 578 CDD GH32_Fruct1-like 58 365 - -
Car01g02701 578 SMART glyco_32 52 532 IPR001362 GO:0004553|GO:0005975
Car01g02701 578 Gene3D - 387 572 - -
Car01g02701 578 SUPERFAMILY Concanavalin A-like lectins/glucanases 376 574 IPR013320 -
Car01g02701 578 ProSitePatterns Glycosyl hydrolases family 32 active site. 52 65 IPR018053 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02701 Car-Chr1 52485398 52489636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02701 67 578 Glycoside Hydrolase AT3G13790 63.532 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02701 K01193 - gmx:100776791 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02701 01 52485398 52489636 Car01g02701 01 52485398 52489636 ECH
Car01g02701 01 52485398 52489636 Car07g03094 07 58101638 58106806 PCT