Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02644 ATGTCCTTATTCAGTGCATTTTTATTTGTAGCCCTCTTCAACCTCTTCACTACACTACCATTTGCATTTGCAGAGGTTGTTGTTTCACCCATTGTTGATGTTTCAACACTCAATCGAACAAGTTTTCCAACAGGTTTCATTTTTGGGACAGCATCCGCAGCATACCAATATGAAGGTGCTGCAAAAGAAGGTGGGAGAGGTGCAAGTATGTGGGACAACTTCACTCATCAGTATCCAGATAAGATAAAAGATAGAAGCAGCGGAGATGTTGCAGTTGACCAATATCACCACTATAAGGAAGATATCGGAATCATGACAAATATGAATTTGGACGCTTACAGATTTTCAATCTCGTGGTCTAGAATCCTCCCAAAAGGAAAACTCGATGGCGGTATAAACCAAGAAGGAATCAAATATTACAACAACCTCATCAATGAGCTTTTGGCTAATGGTTTACAGCCATTCGTAACTCTATTTCATTGGGATATTCCTCAAGCTTTAGAGGATGAATACGGTGGCTTCTTAAGCCCTCACGTTGTAAATGATTTTCGAGATTATGCGGAACTTTGTTTCAAAGAGTTTGGAGATAGGGTGAAACATTGGATTACTTTGAACGAGCCTGTGACTTATAGTAATGTTGGCTATGCAGTCGGAGTTTTTGCACCTGGTCGATGTTCTAAATGGTTGAATTCAAATTGCACTGGTGGTGATTCAGGGACAGAGCCCTACTTGGTTTCACATCACCAACTTCTTGCTCATGCAAAAGTCGTAGAAGTGTATAAGAAGAAATATCAAGAATCTCAAAAGGGTATAATAGGTATAACCTTGGTGACTAGCTGGTTCATTCCATTTTCAAATAGCAAATTAGATCAAATGGCAGCTGAACGAGCAATTGACTTCATGTTTGGATGGTTTATGGATCCACTGACAACAGGGAATTATCCAAAAAGCATGCATTCCTTGGTTGGAAAACGATTGCCAAAGTTTTCTAAAAAACAAAAAAGGCTACTCAAAGGCTCATTTGATTTCCTTGGACTAAACTATTACACCTCTAATTATGCTTCTAATGTACCTCATCTTAGCAATGCTAATCCTAGTTACACCACTGATTCTCATGCCAATCTTACAACTGAGCGCAATGGGGATCCCATAGGTCCAAGGGCAGCTTCAAATTGGCTATTTGTATATCCGAGAGGAATTCATGAATTGTTACTCTATATAAAAAAAAAGTACAACAATCCTTTGATTTACATCACCGAAAATGGTGTCGATGAATTCAACGATCCAACACTATCATTAGAAGAAGCTCTTTTAGACACTTTTAGAATTGACTATTATTATCGTCATCTTTTTTATATTCGATCTGCAATCAGGAACGGCGTAAATATAAAAGGATATTTTGCATGGTCATTGTTGGACAATTTTGAATGGGCATCAGGCTATACAGTGCGTTTTGGAATCAATTTTGTAGATCACAAAAATGGTCTCAAAAGATATCCAAAGTTGTCTGCAAAATGGTTCAAGAGTTTTCTCAAAAGAGATTAG 1545 0.3793 MSLFSAFLFVALFNLFTTLPFAFAEVVVSPIVDVSTLNRTSFPTGFIFGTASAAYQYEGAAKEGGRGASMWDNFTHQYPDKIKDRSSGDVAVDQYHHYKEDIGIMTNMNLDAYRFSISWSRILPKGKLDGGINQEGIKYYNNLINELLANGLQPFVTLFHWDIPQALEDEYGGFLSPHVVNDFRDYAELCFKEFGDRVKHWITLNEPVTYSNVGYAVGVFAPGRCSKWLNSNCTGGDSGTEPYLVSHHQLLAHAKVVEVYKKKYQESQKGIIGITLVTSWFIPFSNSKLDQMAAERAIDFMFGWFMDPLTTGNYPKSMHSLVGKRLPKFSKKQKRLLKGSFDFLGLNYYTSNYASNVPHLSNANPSYTTDSHANLTTERNGDPIGPRAASNWLFVYPRGIHELLLYIKKKYNNPLIYITENGVDEFNDPTLSLEEALLDTFRIDYYYRHLFYIRSAIRNGVNIKGYFAWSLLDNFEWASGYTVRFGINFVDHKNGLKRYPKLSAKWFKSFLKRD 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02644 514 Pfam Glycosyl hydrolase family 1 40 513 IPR001360 GO:0004553|GO:0005975
Car01g02644 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Car01g02644 514 Gene3D Glycosidases 23 513 - -
Car01g02644 514 SUPERFAMILY (Trans)glycosidases 28 512 IPR017853 -
Car01g02644 514 PANTHER GLYCOSYL HYDROLASE 7 513 IPR001360 GO:0004553|GO:0005975
Car01g02644 514 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Car01g02644 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Car01g02644 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Car01g02644 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Car01g02644 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Car01g02644 514 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 7 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02644 Car-Chr1 52049114 52055150 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02644 15 507 Glycoside Hydrolase AT5G42260 57.085 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02644 - K01188 gmx:100812431 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02644 01 52049114 52055150 Car01g02644 01 52049114 52055150 ECH
Car06g03667 06 68078868 68083314 Car01g02644 01 52049114 52055150 ECH