Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02552 ATGTTAGCCTACCAATTGACTTTTTTAGTTGACACGGAACCTTCAAAACAAAGAGGAAAAAGCGAAAATATCGGCCTAGCCGAATGCAAATTCTTCCTCAAAGCAATTGTAAACTCTGGCATTGGCGAGGAAACTTATGCTCCAAGAAACTTCATCGAAGGTCGTGTAGTGAACACGACCTTGGACGACGGAATCATGGAGATGGAGGAGTTTTATCATGATAGCATAGCAAAGCTTCTAAAGAAATCAAATATTTCGCCTTCAGACATCGATATCCTCGTGGTAAATGTATCTTTGTTTTCAGCTGTTCCTTCTTTAACTTCAAGAATCATTAACCATTACAAAATGAGACAGGATATAAAAGCTTATAACCTCTCAGGCGGATGTGCAATCCTTCTTACAAATAAAAGATCCTTAAAACATAAAGCTATATTGAAATTAAAGTGTTTAATCAGAACGCACCACGGTGCAAGAGACGACGCATACAATTGTTGTAGTCAAAAAGAAGATGAACAAGGTAGACTTGGTTTTTTTCTTGCTAAAGATCTTCCAAAAGCAGCTACAAGAGCTTTTGTTGACAACTTAAGAGTTCTATCACCTAAAATTCTACCAGCTAGGGAATTACTTAGGTACTTGTTAATTTCCCTAATAAAAAAAGTGACAAAATCACATGTACCTAAGTCATCAACAAGTAACAAATCACCATTGAATTTCAAAAGTGGTGTTGATCATTTTTGCTTACACACGGGAGGAAAAGCAGTGATAGATGGAATTGGTTTGAGTTTAGATCTAAGTGATTATGATTTGGAGCCAGCAAGAATGTCATTACATAGATTTGGTAACACTTCAGCTAGTAGTTTGTGGTATGTATTAGGGTATATGGAAGCAAAGAAGAGGTTGAAAAAAGGTGAGAGAGTGTTGATGATAAGTTTAGGTGCTGGCTTTAAATGCAATAGTTGTTTATGGGAAGTAATGAGAGAAAAAGAAGATGTTGGAAGTGATGGAAATGTTTGGGAAGATTGCATTCATTACTATCCACCAGAGTCATTGGCCAACCCATTCATGGAGAAGTACGGTTGGATTAATCATGTTCAAGAACCAAGCACTTTCAAAGACAAACTTATTCAGTTTCTCAAATAA 1140 0.3649 MLAYQLTFLVDTEPSKQRGKSENIGLAECKFFLKAIVNSGIGEETYAPRNFIEGRVVNTTLDDGIMEMEEFYHDSIAKLLKKSNISPSDIDILVVNVSLFSAVPSLTSRIINHYKMRQDIKAYNLSGGCAILLTNKRSLKHKAILKLKCLIRTHHGARDDAYNCCSQKEDEQGRLGFFLAKDLPKAATRAFVDNLRVLSPKILPARELLRYLLISLIKKVTKSHVPKSSTSNKSPLNFKSGVDHFCLHTGGKAVIDGIGLSLDLSDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGFKCNSCLWEVMREKEDVGSDGNVWEDCIHYYPPESLANPFMEKYGWINHVQEPSTFKDKLIQFLK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02552 379 PANTHER 3-KETOACYL-COA SYNTHASE 16 127 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car01g02552 379 PANTHER 3-KETOACYL-COA SYNTHASE 16 127 - -
Car01g02552 379 SUPERFAMILY Thiolase-like 150 325 IPR016039 GO:0016746
Car01g02552 379 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 241 323 IPR013747 -
Car01g02552 379 Gene3D - 9 130 IPR016039 GO:0016746
Car01g02552 379 SUPERFAMILY Thiolase-like 29 130 IPR016039 GO:0016746
Car01g02552 379 Pfam FAE1/Type III polyketide synthase-like protein 21 130 IPR013601 GO:0006633|GO:0016020|GO:0016747
Car01g02552 379 PANTHER 3-KETOACYL-COA SYNTHASE 126 367 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car01g02552 379 PANTHER 3-KETOACYL-COA SYNTHASE 126 367 - -
Car01g02552 379 Gene3D - 131 324 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02552 Car-Chr1 51241491 51243761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02552 20 371 Acyl Lipid Metabolism Gene Families AT2G28630 53.382 7.00e-148 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02552 K15397 - tcc:18590770 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02552 01 51241491 51243761 Car01g02552 01 51241491 51243761 ECH
Car06g03546 06 66697456 66699254 Car01g02552 01 51241491 51243761 ECH
Car01g02552 01 51241491 51243761 Car06g03546 06 66697456 66699254 PCT