Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02535 ATGCCATCATCATTTTTATTTTTTCTCCACATGGTTCCTCTCTTTTCTCTTTTATTCTCATCCATGATTTATAATAGTAATGCTCATGGTCCACCTTCACCAGGGTACTACCCTAGTTCTAAAGTCAGCACTGTTAGCTTTGATCAAGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAATTAGACCAACAATCATTAACAATATGGCTTGACACTACCTCAGGGAGTGGGTTCAAGTCACTTCATGATTATCGATCAGGATATTTTGGTGCTGCGGTTAAACTTCAACCTGGTTATACTGCAGGAGTTATTACATCTTTCTATCTTTCAAACAATCAAGACTACCCTGGAAACCATGATGAGATAGACATTGAATTCCTTGGTACCACACCAGATAAGCCATATGTCTTGCAAACAAATGTGTACATTAGAGGAAGTGGAGATGGGAAGATTATTGGAAGAGAGATTAAATTTCATCTTTGGTTCGACCCAACTAAAGATTTTCACAACTATGCCATTCTATGGAAATCTAGTGAGATCATATTTTTAGTGGATGATGTTCCAATAAGAAGGTATCCTAGGAAGAGTGATGCTACATTTCCTTCAAGACCAATGTATCTGTATGGATCAATATGGGATGCATCTTCATGGGCAACGGATAATGGAAGATACAAAGCAAATTATACATACCAACCCTTTATTGGTAAATACAAAAACTTCAAAGTACAAGGTTGTAGCATTGAATCCACCTCTTCATGCCGGCCACCTTCTGGTTCGCCTTCCGGCCATGGCAGCGGCCTCAGCCCTAAGCAGTTTGCGGCAATGCAATGGGTCCATAACAATTACTTGGTCTATAACTATTGTCATGATCCTAAGAGAGACCATACATTTACTCCAGAATGTTAA 909 0.3927 MPSSFLFFLHMVPLFSLLFSSMIYNSNAHGPPSPGYYPSSKVSTVSFDQGFRNLWGPQHQKLDQQSLTIWLDTTSGSGFKSLHDYRSGYFGAAVKLQPGYTAGVITSFYLSNNQDYPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGKIIGREIKFHLWFDPTKDFHNYAILWKSSEIIFLVDDVPIRRYPRKSDATFPSRPMYLYGSIWDASSWATDNGRYKANYTYQPFIGKYKNFKVQGCSIESTSSCRPPSGSPSGHGSGLSPKQFAAMQWVHNNYLVYNYCHDPKRDHTFTPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02535 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 302 IPR013320 -
Car01g02535 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car01g02535 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 238 IPR000757 GO:0004553|GO:0005975
Car01g02535 302 PIRSF EndGlu_transf 7 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car01g02535 302 Pfam Glycosyl hydrolases family 16 48 230 IPR000757 GO:0004553|GO:0005975
Car01g02535 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 14 302 - -
Car01g02535 302 Gene3D - 27 302 - -
Car01g02535 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 14 302 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02535 Car-Chr1 51086321 51088270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02535 15 302 Glycoside Hydrolase AT3G44990 64.041 1.21e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02535 K08235 - gmx:100781528 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02535 01 51086321 51088270 Car01g02535 01 51086321 51088270 ECH
Car01g02535 01 51086321 51088270 Car06g03434 06 64447969 64450794 PCT