LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g02528	ATGTCGCTGCAGAAGAAGAAGAATAACAAAAACACCGATCAACAAAACGAAACCAAGAAAGATCATGAAACCAAAACGACACCAACTACAGTCGTATTGAAAATTGACATGCATTGCGACGGTTGCACTTCCAAAATCATCCGCTGCCTTCGCGGCTTCCAAGGCGTTGAGAAGTTGGACGTAGAGAAAGACACCGGAAAGTTGACCATCACCGGCAAAGTTGATCCTGCTAAACTCAGAGACAAACTCGCTAGTAAGATGAAGAAGAAAGTCGATCTCATTTCTCCACTTCCTAAGGAAAACAAATCTCAAAACGACAACAAAAACAAACCCGACGACAAAAAATCCAAACAGAAGGAGCCACCGGAGACGACGGCGGTTTTGAAGATGGAGCTACATTGTCAAGGTTGTATCGAGAGAATTCGCAAAACCGTGTCGAAGGCGAAAGGTGTTTATCACGTGGAAATTGATAAGGAAAAAGAGACGGTAACGGTTAAAGGAACAATGGACGTGAAAGCATTAGCGGGAAGTTTGACGGAGAGACTTAAGAGGAAGGTTGAGGTGGTCCCTACAAAGAAGGAAAAAGGGAATGAGAAAGACGGAGACAAGAAAGAGAAAGACGGAGACAAAAAAGAGAATGACGGCGGCAAGAAGAATAAACAGAAAGGTGAAGGTGGAGGAGGAAATAAGAAGGGTGAGAATGACGGTGGTGACGGCAAGGGTAAAATGGAGAATTTGACCCCtggatgtggatatggatacggttatggttatAGTTTTTTTGGTTATGAAGATGGTGGTTATAACAATGGGTCAGTTAACATGATGCAGTTGAATGCACCGCAGATTTTCAGTGACGAAAATCCGAATGCGTGTTCGGTTATGTGA	888	0.4212	MSLQKKKNNKNTDQQNETKKDHETKTTPTTVVLKIDMHCDGCTSKIIRCLRGFQGVEKLDVEKDTGKLTITGKVDPAKLRDKLASKMKKKVDLISPLPKENKSQNDNKNKPDDKKSKQKEPPETTAVLKMELHCQGCIERIRKTVSKAKGVYHVEIDKEKETVTVKGTMDVKALAGSLTERLKRKVEVVPTKKEKGNEKDGDKKEKDGDKKENDGGKKNKQKGEGGGGNKKGENDGGDGKGKMENLTPGCGYGYGYGYSFFGYEDGGYNNGSVNMMQLNAPQIFSDENPNACSVM	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g02528	295	MobiDBLite	consensus disorder prediction	10	25	-	-
	Car01g02528	295	Gene3D	-	26	101	-	-
	Car01g02528	295	Gene3D	-	123	195	-	-
	Car01g02528	295	SUPERFAMILY	HMA, heavy metal-associated domain	27	85	IPR036163	GO:0046872
	Car01g02528	295	MobiDBLite	consensus disorder prediction	1	25	-	-
	Car01g02528	295	MobiDBLite	consensus disorder prediction	103	126	-	-
	Car01g02528	295	CDD	HMA	32	91	IPR006121	GO:0046872
	Car01g02528	295	CDD	HMA	132	167	IPR006121	GO:0046872
	Car01g02528	295	MobiDBLite	consensus disorder prediction	186	241	-	-
	Car01g02528	295	ProSiteProfiles	Heavy-metal-associated domain profile.	37	83	IPR006121	GO:0046872
	Car01g02528	295	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3	5	295	-	-
	Car01g02528	295	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6	5	295	IPR044594	GO:0046872
	Car01g02528	295	Pfam	Heavy-metal-associated domain	131	187	IPR006121	GO:0046872
	Car01g02528	295	Pfam	Heavy-metal-associated domain	33	90	IPR006121	GO:0046872
	Car01g02528	295	MobiDBLite	consensus disorder prediction	86	127	-	-
	Car01g02528	295	MobiDBLite	consensus disorder prediction	186	240	-	-
	Car01g02528	295	SUPERFAMILY	HMA, heavy metal-associated domain	123	179	IPR036163	GO:0046872
	Car01g02528	295	ProSiteProfiles	Heavy-metal-associated domain profile.	132	187	IPR006121	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car01g02528	Car-Chr1	51023469	51025010	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g02528	-		-	aprc:113856391	248.054

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car01g02528	01	51023469	51025010	Car01g02528	01	51023469	51025010	ECH
	Car01g02528	01	51023469	51025010	Car06g03443	06	64627993	64630001	PCT