Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02501 ATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGGAGCTGCTTCAACCTTCCTTCTTACACTTGCATTCGTGAAGGTCCCGATCACGCGCCGAGGTTTAAAGCTACAGTTAACTTTAACGGCGAGATCTTTGAGAGTCCTCACTACTGTTCAACTCTCCGTCAAGCTGAACACTCCGCAGCTGAAGTAGCACTCAATTCACTCTCCCACCGTGGTCCCTCTCACTCACTCGCCGCTAAGATCCTCGATGAGACTGGAGTCTACAAGAACCTCTTACAGGAAATTGCACAGCGAGTAGGGGCCCCATTGCCTCAGTACACAACATTTAGATCAGGCCTAGGGCATTTACCTGTTTTTACTGGGATAGTAGAATTGGCTGGAATCACATTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCCGAGAAAAATGCAGCTATGGCAGCTTGGTCATCTTTAAAGCAATTGGCAAAAGAGACTGCTAGCTCTTCAACTGAACCTGAGAACAATGACGAATTAGAACAGATCACTATAGCACGGGCTTTGCTGAACTACCGTCTTAAGGAAAAGATGGCAATGTCTAATCCAAATGCTCTAATTCCATTTCAGAAGAAATTTCAGATTCAAAATCTCAGACCAACCAGTTCTCAACATCCTCCTGCGACCACATCAAAGATCCTTCCCCTAATTTGCCAAAAGAATGGATCTCGAAGCAAGCCTTCATCGGCAACTGCAAATGAAAATCCTCGAAGCAGGAATCTGCCAGCAGCAGTAACAAATGACAAGTCCACGGTGCAGCCGCTACAGTCTTCTGCACTAGAAAGCCGGGGGACCCGTCCTCTGAAATTCCCTGCAGTGGGTGCAGCACCTTATGTTCCCATTCGACAAATGAGACCACCTTGCCATGGGATTGCACCTCCAGTGGCTATGAGGACCGTAGTACCTGTGTTCTCTGCACCGCCTCTTCCACCACCTGCCTCAGTCCATCGGATAATACGCGCTCCTCCTGTACGAATTGCTCCTCCAGTCAGTATTCGACAAGCTGTTCCTGTATATGCTGCCCCACCTTCAAGACAAGATGAACCTGCCCCCCTCCTAAAAGATCTACCTACCCCCATCCTAAAAGATCTACCTGCCAGTAATACTGTCCAGCAAGATAAGCTTCCAGCTAAAATTCAAGAGATGGACAAGACTGAGAACAACCAACCACAGTCAGAGACTGTGGTGAGCCCACCACAATCAGAGACAGTGATGAGTTTGGAGCCGCTGAAAATTTGA 1278 0.4789 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMAMSNPNALIPFQKKFQIQNLRPTSSQHPPATTSKILPLICQKNGSRSKPSSATANENPRSRNLPAAVTNDKSTVQPLQSSALESRGTRPLKFPAVGAAPYVPIRQMRPPCHGIAPPVAMRTVVPVFSAPPLPPPASVHRIIRAPPVRIAPPVSIRQAVPVYAAPPSRQDEPAPLLKDLPTPILKDLPASNTVQQDKLPAKIQEMDKTENNQPQSETVVSPPQSETVMSLEPLKI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02501 425 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 391 - -
Car01g02501 425 Gene3D - 2 83 - -
Car01g02501 425 MobiDBLite consensus disorder prediction 233 276 - -
Car01g02501 425 SMART DRBM_3 88 154 IPR014720 -
Car01g02501 425 SMART DRBM_3 2 69 IPR014720 -
Car01g02501 425 MobiDBLite consensus disorder prediction 395 417 - -
Car01g02501 425 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Car01g02501 425 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Car01g02501 425 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Car01g02501 425 Gene3D - 84 155 - -
Car01g02501 425 MobiDBLite consensus disorder prediction 355 425 - -
Car01g02501 425 SUPERFAMILY dsRNA-binding domain-like 88 158 - -
Car01g02501 425 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Car01g02501 425 PANTHER - 1 391 - -
Car01g02501 425 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Car01g02501 425 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Car01g02501 425 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02501 Car-Chr1 50700919 50705969 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02501 - - cam:101510954 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02501 01 50700919 50705969 Car01g02501 01 50700919 50705969 ECH
Car01g02501 01 50700919 50705969 Car06g03481 06 65607471 65611422 PCT