Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02477 ATGAGAGACAAAGCAACCCTTTTGATCATGCTTCTTATTCTTTGTCATGGTGTGGCCATGACAAAGGGGTTGTGGGAGATAAAGAATGAAGATAGAGAAGATCATGGGCCTCAAATGCCAGAGAAATTGTTTTTGTTGCAAAACTCAAAGCGTGTGGTGAAGACTGATGCAGGGGAGATGAGAGTGTTGGAGAGTTATGGTGGTAGAGTTTCTGAGAGACGCTTGCACATTGGCTTCATTAATATGGAACCAAGTTCTCTCTTTGTTCCTCAATATCTTGATTCCACTCTCATTGTATTTGTCCGTTCAGGGGAAGCAAAGGTGGGATTCATATATGAGGATGAACTAGCAGAAAGGGAACTAAAGAGGGGGGATGTGTATCAAATTCCAGCTGGTTCTGCATTCTATTTATTGAATATTGGAAAGGCTCAAAAGCTTCACATTATCTGCAGCATCGATCCTTCAGAGAGTTTGGGAATAGGTATTTTTCAGTCTTTCTATATTGGAGGAGGAGCTCCAGTATCAGTACTTTCCGGTTTCGAGCCTCAAATCCTAGAAACTGCTTTTAACGCATCAGAAGCAGAGTTGATTAAATTCTTCACAAGACAACATGAGGGTCCAATTGTGCACATAGGTGATTCACATGTCAGTGCCTCAAGCTTATGGAACAAGTTTCTTCAACTAAAAGAGGATGAAAAACTAAACCACTTGAAGAAACTGGTGCaagatcaagaagaagatgaggatgatgaagaaaaagaagaagaaaagCCACAACCAAGTTGGTCTTGGAGGAAGCTCTTGGAATCAGTATTTGGGGATGAGATGAAAAAGAACAAAAAGGACAAAGTTTCCCATAAATCTCCTCACTCATGCAACCTCTACGACAGAAAACCAGATTTCAAAAACACTTATGGTTGGAGCGTTGCTCTAGACGGTTCCGATTATTCTCCACTCAAAACTTCTGGCATTGGCATTTATCACGTCAATCTCAAACCGGGATCAATGATGACACCCCATGTAAATCCAAGGGCAACAGAGTATGGCATGGTGGTAAAAGGTTCAGGTAGAATCCAAATAGTATTTCCAAATGGAAGCAATGCAATGGACACACATATAAAAGAAGGGGATGTTTTCTTTGTACCAAGATACTTTGCATTTTGCCAAATAGCATCAAAGAATGAACCACTAGATTTCTTTGGGTTTACCACTTCATCaaggaagaacaagccacaatttttggtgggtgctacttcactcatgaagactatgatgggacctgagcttgctgctgcttttggagtgagTGAGGATACAATGAGACACATTCTTAATGCACAACATGAGGCTGTCATACTACCTACCCCATGGACTGAATCTAAACAAAATTATGGCAACAAATTGGATTTGGAGAGCCTTCCTACAACAAAGGTTGTCACAAATGATGATATGATTATCGGCTTTTAA 1467 0.3667 MRDKATLLIMLLILCHGVAMTKGLWEIKNEDREDHGPQMPEKLFLLQNSKRVVKTDAGEMRVLESYGGRVSERRLHIGFINMEPSSLFVPQYLDSTLIVFVRSGEAKVGFIYEDELAERELKRGDVYQIPAGSAFYLLNIGKAQKLHIICSIDPSESLGIGIFQSFYIGGGAPVSVLSGFEPQILETAFNASEAELIKFFTRQHEGPIVHIGDSHVSASSLWNKFLQLKEDEKLNHLKKLVQDQEEDEDDEEKEEEKPQPSWSWRKLLESVFGDEMKKNKKDKVSHKSPHSCNLYDRKPDFKNTYGWSVALDGSDYSPLKTSGIGIYHVNLKPGSMMTPHVNPRATEYGMVVKGSGRIQIVFPNGSNAMDTHIKEGDVFFVPRYFAFCQIASKNEPLDFFGFTTSSRKNKPQFLVGATSLMKTMMGPELAAAFGVSEDTMRHILNAQHEAVILPTPWTESKQNYGNKLDLESLPTTKVVTNDDMIIGF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02477 488 PANTHER OS03G0336100 PROTEIN 1 463 - -
Car01g02477 488 Pfam Cupin 293 439 IPR006045 -
Car01g02477 488 Pfam Cupin 47 193 IPR006045 -
Car01g02477 488 PANTHER OS03G0336100 PROTEIN-RELATED 1 463 - -
Car01g02477 488 SMART Cupin_1_3 43 197 IPR006045 -
Car01g02477 488 SMART Cupin_1_3 292 441 IPR006045 -
Car01g02477 488 MobiDBLite consensus disorder prediction 242 261 - -
Car01g02477 488 CDD cupin_7S_vicilin-like_N 52 220 - -
Car01g02477 488 CDD cupin_7S_vicilin-like_C 299 450 - -
Car01g02477 488 Gene3D Jelly Rolls 284 456 IPR014710 -
Car01g02477 488 Coils Coil 234 257 - -
Car01g02477 488 Gene3D Jelly Rolls 33 222 IPR014710 -
Car01g02477 488 SUPERFAMILY RmlC-like cupins 43 450 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02477 Car-Chr1 50506792 50510079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02477 52 453 Miscellaneous Gene Families AT2G18540 28.571 1.03e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02477 - - gmx:100818796 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02477 01 50506792 50510079 Car01g02477 01 50506792 50510079 ECH
Car01g02477 01 50506792 50510079 Car06g03513 06 66076899 66080236 PCT