Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02358 ATGGCAGCTCTCACTTCTTTGTCATTCTCAACCTTAACTCAATGCTCAAAGAGAAAATCAACTATGACATCCACTCTTGGAATTCGGACACATTTCTCTTACCATCATAATTATGTTGGTGTTCGACCTTTCAATTCTACATCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGATATTCCCAGTGTCTCTGAGACAAAGTTAAGTTTCCTAAAGGCATATAAACGACCAATCCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTCCAGCATCATTTAATGAGATACAAGACATCATACCGTTATGATCCTGTATTTGCTCTTGGTTTTGTCACAATTTATGACAAACTCATGGAAGGTTATCCTAGTGATGAGGACAGAGATGCCATCTTCAAAGCTTATATTAATGCATTGAAGGAAGATCCACAACAATACAGAATTGATGCACAGAAGTTGGAAGAGTGGGCTCGGGCTCAAAACTCAACTTCCTTGGTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAAGGGATATTAAAGGATGTTGCAGAAAGAGCAGGAGGAAAAGGTGAATTCAGTTACAGTCGGTTCTTTGCGGTCGGCCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGCTTTGTGCCGTTTTGAACGTCAACAAAAGAAGCGTAGATCGGGACTTGGATGTGTATCGGATGCTGCTTTCCAAGCTGGTTCAAGCAAAAGAGTTGCTAAGGGAATATATTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAGAACGCTAATGGGGCAATTGCAAAATGTTTGGGGCAACAATTGTCTGTTCTGTAG 870 0.4046 MAALTSLSFSTLTQCSKRKSTMTSTLGIRTHFSYHHNYVGVRPFNSTSKMVIQCMSSVTDIPSVSETKLSFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYRYDPVFALGFVTIYDKLMEGYPSDEDRDAIFKAYINALKEDPQQYRIDAQKLEEWARAQNSTSLVEFSSKEGEVEGILKDVAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAVLNVNKRSVDRDLDVYRMLLSKLVQAKELLREYIDREKKKREERAEPQNANGAIAKCLGQQLSVL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02358 289 Coils Coil 247 270 - -
Car01g02358 289 Hamap Protein Thf1 [thf1]. 58 266 IPR017499 GO:0010207|GO:0015979
Car01g02358 289 Pfam Thylakoid formation protein 64 268 IPR017499 GO:0010207|GO:0015979
Car01g02358 289 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 279 - -
Car01g02358 289 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 279 IPR017499 GO:0010207|GO:0015979
Car01g02358 289 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 60 265 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02358 Car-Chr1 49395083 49403945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02358 - - gmx:100814341 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02358 01 49395083 49403945 Car01g02358 01 49395083 49403945 ECH
Car01g02358 01 49395083 49403945 Car06g03191 06 58826727 58831877 PCT