Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02300 ATGGCTTCATCTGCCTCATCACTCCTCAGAGCAACAAGGTCCAGACTCTCCTCTTCTTCTTATCTTTCTAGAACCATCTCTTCTCCTCCCGTTCGTCCATCTCCCTCCCGATCTCCCGCTTTCTCATCATCCGCCGCCGCCGCTCGTTCCTCTGTCAACCGATGGAGTCACGGTGTTCATTGGAGATCTCCTTTCTCGCTTCGCCCTCAGATCAGAGCCGTTGCTCCCTTTATCGAACGCTTCCATCGCAAGATCGCCACTTCCGCTGGTGAAAATCCTTTCAAGGGAAACTTGGCTACTCTCCCCAAGCCTGGTGGTGGTGAATTTGGAAAGTTCTACAGCCTTCCTTCTCTCAACGATCCGAGAATTGATAGGTTGCCGTACTCTATCAGAATTCTCCTTGAATCTGCCATTCGCAATTGTGACAACTTCCAAGTCACCAAAGAAGATGTTGAAAAGATTATTGACTGGGAAAACACTTGTGTAAAGCAAGTTGAGATCCCTTTCAAGCCTGCCCGTGTTCTCCTGCAGGATTTTACTGGAGTCCCAGCTGTTGTTGATCTGGCATGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCTAATAAGATCAATCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGACGTAGCAAGGTCAGAGAATGCAGTGCAGGCAAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGATCAACTGCTTTCCGTAATATGCTCGTTGTACCTCCTGGTTCTGGTATAGTACATCAGGTCAACCTTGAATATCTTGGTCGAGTTGTTTTCAACAATGAGGGGTTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATCGATGGGCTTGGAGTTGCTGGATGGGGTGTCGGGGGTATTGAAGCAGAGGCAGCAATGCTTGGTCAGCCTATGAGCATGGTATTACCTGGTGTTGTTGGGTTCAAGTTGTCTGGTAATTTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTCACACAAATTCTTAGGAAACATGGTGTTGTTGGGAAATTTGTTGAATTTTATGGTGATGGTATGAGTAAATTGTCATTAGCTGACAGGGCCACTATTGCCAATATGTCTCCTGAATATGGAGCAACCATGGGTTTCTTCCCTGTAGATCATGTAACATTACAATACCTCAAGCTAACTGGAAGAAGCGATGAGACTGTGGCAATGATAGAGGCCTATCTCAGGGCTAACAAATTGTTTGTTGACTATGATGAGCCTCAAAAAGACAGAGCTTATTCATCCTATCTTGAATTGAATCTTGACGAAGTCGAACCATGTATCTCGGGACCAAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGATTGGCATGCTTGTCTTGATAACAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGAAGCTCAAGGCAAAGTTGCCAAATTTGATTTCCATGGGCAGCCAGCAGAGCTAAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGTGTTATGCTCGGGGCTGGTCTTGTTGCAAAGAAGGCTCACGAGTTAGGTTTGCAGGTTAAACCTTGGGTAAAAACAAGTCTTGCTCCAGGCTCTGGAGTCGTTACAAAATATCTACTTCAAAGTGGCCTACAAAAGTATCTAAATGAGCAGGGTTTCAATATTGTTGGATTTGGCTGTACCACATGTATCGGCAATTCAGGAGATTTGGATGAATCAGTTGCTTCTGCTATCACAGAAAATGACATATTAGCGGCTGCTGTGCTGTCAGGAAACCGTAATTTTGAGGGCCGAGTGCATGCCTTGACACGTGCTAACTATCTTGCCTCCCCTCCTCTGGTTGTTGCTTATGCTCTTGCTGGCACGGTTGACATTGACTTTGAAAAGGAACCATTAGGGACTGGAAAGGATGGCAAGAATGTCTACTTGAGGGATATTTGGCCATCCACCGAAGAAATTGCACAGGCTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAATCTATTACGAAGGGTAACCCGATGTGGAACCAACTACAACCTCCATACTTCAAGGACATGACCATGGATCCTCCTGGACCTCATGGTGTAAAAGATGCTTATTGCCTGCTGAATTTTGGCGACAGTATCACAACTGATCACATTTCTCCTGCTGGAAGCATTAACAAGGACAGTCCGGCTGCCCAATACCTTAAGCAGCGTGGGGTAGAAAGAAAGGATTTCAACTCTTATGGAAGTCGTCGTGGAAATGATGAAGTTATGTCTAGGGGAACTTTTGCCAACATACGTCTTGTAAACAAGCTCTTAAATGGGGAAGTTGGCGCGAAGACAGTGCATGTTCCAACAGGAGAGAAGCTTTATGTTTTTGATGCAGCAGAGAGATACAAGGCTGCAGGGCACGACACCATTGTCCTGGCCGGAGCTGAATATGGTAGTGGAAGTTCCAGGGATTGGGCCGCCAAGGGTCCCATGCTATTGGGAGTCAAAGCTGTGATAGCCAAAAGTTTTGAGAGAATTCATCGCAGTAATTTGGTAGGAATGGGTATTATTCCCCTTTGCTTCAAATCCGGCGAGGATGCTGACACCTTGGGATTGACTGGCCGCGAACGTTATACAATTGACCTTCCAGATAAAATCAGCGAGATAAAGCCTGGCCAAGATGTCACTGTCACAACTGATACCGGAAAATCTTTCACCTGCAAAGCTCGCTTTGACACTGAGGTGGAATTGGAGTACTTTAACCATGGAGGCATTCTTCCCTATGTCATCAGGAACCTCGCTAAGTAG 2901 0.455 MASSASSLLRATRSRLSSSSYLSRTISSPPVRPSPSRSPAFSSSAAAARSSVNRWSHGVHWRSPFSLRPQIRAVAPFIERFHRKIATSAGENPFKGNLATLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTCVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGNLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMSKLSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKLFVDYDEPQKDRAYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGFGCTTCIGNSGDLDESVASAITENDILAAAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPLGTGKDGKNVYLRDIWPSTEEIAQAVQSSVLPDMFRSTYESITKGNPMWNQLQPPYFKDMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSINKDSPAAQYLKQRGVERKDFNSYGSRRGNDEVMSRGTFANIRLVNKLLNGEVGAKTVHVPTGEKLYVFDAAERYKAAGHDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGRERYTIDLPDKISEIKPGQDVTVTTDTGKSFTCKARFDTEVELEYFNHGGILPYVIRNLAK 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02300 966 CDD AcnA_IRP 173 657 - -
Car01g02300 966 ProSitePatterns Aconitase family signature 2. 586 599 IPR018136 -
Car01g02300 966 PRINTS Aconitase family signature 524 535 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 301 316 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 377 390 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 234 247 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 459 473 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 287 300 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 258 266 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 363 376 IPR001030 -
Car01g02300 966 PRINTS Aconitase family signature 586 599 IPR001030 -
Car01g02300 966 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 56 965 IPR006249 -
Car01g02300 966 SUPERFAMILY Aconitase iron-sulfur domain 106 718 IPR036008 -
Car01g02300 966 SUPERFAMILY LeuD/IlvD-like 713 964 - -
Car01g02300 966 Pfam Aconitase family (aconitate hydratase) 152 655 IPR001030 -
Car01g02300 966 Gene3D Aconitase, domain 4 730 966 IPR015928 -
Car01g02300 966 Gene3D Aconitase, domain 3 460 713 IPR015931 -
Car01g02300 966 TIGRFAM aconitase_1: aconitate hydratase 1 110 964 IPR006249 -
Car01g02300 966 CDD AcnA_IRP_Swivel 743 913 IPR044137 -
Car01g02300 966 Pfam Aconitase C-terminal domain 766 893 IPR000573 -
Car01g02300 966 Gene3D Aconitase, domain 3 91 459 IPR015931 -
Car01g02300 966 PANTHER ACONITATE HYDRATASE 56 965 - -
Car01g02300 966 MobiDBLite consensus disorder prediction 21 42 - -
Car01g02300 966 ProSitePatterns Aconitase family signature 1. 520 536 IPR018136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02300 Car-Chr1 48818406 48826928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02300 K01681 - gmx:100810088 1710.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02300 01 48818406 48826928 Car01g02300 01 48818406 48826928 ECH
Car01g02300 01 48818406 48826928 Car06g03255 06 60358757 60367790 PCT