Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02297 ATGGCTAAGAGTTCATTCAAGATGGAACACCCCCTTGAGAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCCGATAGAATTCCAGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCAGATATCGACAAGAAAAAGTATCTGGTTCCTGCGGATCTAACTGTTGGCCAATTCGTGTATGTGGTCCGAAAGAGAATCAAATTGAGTCCAGAGAAGGCCATCTTCATTTTCGTGAAGAACATTTTACCGCCAACAGCTGCTATGATGTCTGCAATATATGAGGAAAACAAGGATGAAGATGGATTCCTGTATATGACTTACAGTGGGGAAAACACGTTTGGTTTGGGATGTTGA 363 0.4298 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLGC 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02297 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Car01g02297 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Car01g02297 120 CDD Ubl_ATG8 12 114 - -
Car01g02297 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Car01g02297 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Car01g02297 120 Gene3D - 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02297 Car-Chr1 48745502 48748179 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02297 K08341 - tcc:18610109 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02297 01 48745502 48748179 Car01g02297 01 48745502 48748179 ECH
Car01g02297 01 48745502 48748179 Car01g00663 01 5555956 5558949 ECH