Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02279 ATGTATCGCCACATCTACACCGCCCTTCTTCTTTTCATTCTCTCCATTTCCCTCTCTtcatcatcatcatcatcatcatcatcaCCAACGAGtcaaatcaactccaactcagttctactagctcttctcgactcacattacactgaactcGCCGAACTCATTGAAAAAGCAATGCTATTACAAACACTCGAACAAACCGTTGCCACTCACAACATCACCATCTTCGCACCAAACAACCAAGCTCTCGAACGTAATCTCGATCCCGATTTCAAACAATTCCTTCTCCAACCGGGTAACATTCATTCTCTTCAATCTCTCCTCTTGTTCCACGTGATTCCCACCAATATCGGATCTAAAAAACAAACCGGCTCGACCCGCTTCAAAACTCTCTCCAACCATAACATCAACGTGGATACGAATATCACCACCGGAGAATTAACGGTCGAACAAATCAAAATCGTTCATCCGGATTTTATAACCCGACCCGACGGCGTCATCCACGGGATCCAAAATCTCCTTATACCACGCTCCGTCGTGGACGACTTCAACCGCCGCCGTAGTCTCCGTTCAATCACCGCCGTGAAACCAGAACCATCACCAGAAGTGGACACGAGAAACCACAAGCTAAAGAAACAAAAACAACCTCCATCGGAAAAACCAGGTTCACTGCCGAAACTTCCGATCTACGAAGCTATGTCACCGGGACCTTccctggccccggccccggcgccgggaccaggctccccgcaccACCACTTCAACGGCGATGCAAACGTGAAGGATTTCATTAAAACGTTAATCCGTTACGGTGGTTACAACGAAATGGCTGATATTCTCGTAAACCTAACGTCGTTAGCAACCGAAATGAGCCGTTTAGTTTCGGAAGGTTACGTATTAACAGTTTTGGCACCAAATGACGAAGCGATAGGGAAGTTAACGACGGAACAGTTAAGTGAACCGGGTTCACCTGAAGAGATAATGTATTACCATATTATCCCTGAGTATCAAACCGAAGAGAGTATGTATAATGCGGTTAGAAGATTCGGGAAGGTTCGATATGATACGCTTCGGTTACCGCATAAGGTTTTGGCCGAGGAAGCTGATGGGTCTGTTAAATTTGGGAATGGTGACGTGTCGGGTTATTTGTTTGACCCGGATATTTATACGGATGGGAGGATTTCTGTTCAGGGGATTGATGGGGTTTTGTTTCCTATGGTGGAAGAGGAGAAGGTGGAGCGGGATAAACCCGTTTCGAAGATGGGTCAACCCGGAAAAGTTCAACACAGAAGAGGTAAACTTTTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGACTCGCCTCTTGTCAATGA 1365 0.4154 MYRHIYTALLLFILSISLSSSSSSSSSSPTSQINSNSVLLALLDSHYTELAELIEKAMLLQTLEQTVATHNITIFAPNNQALERNLDPDFKQFLLQPGNIHSLQSLLLFHVIPTNIGSKKQTGSTRFKTLSNHNINVDTNITTGELTVEQIKIVHPDFITRPDGVIHGIQNLLIPRSVVDDFNRRRSLRSITAVKPEPSPEVDTRNHKLKKQKQPPSEKPGSLPKLPIYEAMSPGPSLAPAPAPGPGSPHHHFNGDANVKDFIKTLIRYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAIGKLTTEQLSEPGSPEEIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVLAEEADGSVKFGNGDVSGYLFDPDIYTDGRISVQGIDGVLFPMVEEEKVERDKPVSKMGQPGKVQHRRGKLLETACWMLGTFGQHSRLASCQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02279 454 SMART fasc_3 73 176 IPR000782 -
Car01g02279 454 SMART fasc_3 300 405 IPR000782 -
Car01g02279 454 SUPERFAMILY FAS1 domain 41 176 IPR036378 -
Car01g02279 454 Pfam Fasciclin domain 46 175 IPR000782 -
Car01g02279 454 Pfam Fasciclin domain 282 372 IPR000782 -
Car01g02279 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 5 454 IPR044654 -
Car01g02279 454 MobiDBLite consensus disorder prediction 190 252 - -
Car01g02279 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 5 454 - -
Car01g02279 454 ProSiteProfiles FAS1/BIgH3 domain profile. 34 173 IPR000782 -
Car01g02279 454 Gene3D FAS1 domain 254 404 IPR036378 -
Car01g02279 454 Gene3D FAS1 domain 39 176 IPR036378 -
Car01g02279 454 ProSiteProfiles FAS1/BIgH3 domain profile. 259 402 IPR000782 -
Car01g02279 454 MobiDBLite consensus disorder prediction 200 215 - -
Car01g02279 454 SUPERFAMILY FAS1 domain 238 404 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02279 Car-Chr1 48566845 48570012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02279 - - gmx:100782264 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02279 01 48566845 48570012 Car06g03291 06 61595358 61600893 PCT