Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01612 ATGTTGACGCTGCTTCTACCCACTCCTCCTCGCCTCACCTCAATTCACCGCCGCAACACGTTATCATCGCCATCTTCTACTTCCGCACTTCAATTTCATCGTCGATTCtcttcttcttcttcttcttcttcttcttcATTTCTCTCTCTTCCCCACACTACTTCAAGAAGATGCAATTCTCTTCGCGCTTTCGATTCTTCCTCCGACTCCAAAATTAAAGAAGAAGATAAAGAAGGTGCTATTGACGGTCAAAATGTTAGAATCGCTGATGAGGATTATCCGAGTGGTGAGTTCGAATTCGAACCTATTACTGGGTGGAGGAACTTCCTTGTTAAGGTTAAGATGTTGATTGCGTTCCCTTGGGAACGTGTTCGTAAAGGAAGTGTCCTCACAATGAAGCTTCGTGGCCAGATATCTGATCAAGCGAAGAGTAGGTTCTCTCCGGGACTTTCTCTACCCCAAATTTGCGAGAATTTTTTGAAAGCAGCCTACGATCCTCGGATTTCTGGGGTCTATCTCCATATTGATAGTTTAAACTGTGGGTGGGGTAAAGTGGAAGAAATTCGAAGACACATATTGAATTTCAAAAAATCAGGAAAATTTGTTGTGGCTTATGTTCCTACATGTCAAGAAAAAGAATATTACCTTGCGAGTGCATGTGAAGAGATATATGCCCCTCCAAGTGCTTACTTTTCTTTGTTCGGATTGAGTGTTCAAGCCTCATTCCTCAGAGGTGTTTTAGAAAATATAGGAATTGAACCACAAGTGGAAAGGATAGGCAAGTACAAAAGTGCAGGAGATCAACTAGCTCGAAGGACCATGTCTGATGAAAATTGTGAGATGCTGACTGCATTGCTTGATAACATCTATACAAACTGGCTGGATAAAGTCTCTTCTGCCAAAGGAAAGGGAAGAGAAGATATTGAGAAGTTCATAAATGAAGGTGTTTATCAAGTTGATAAGCTGAAAGAAGAAGGCCTTATATCAAATATAATCTATGATGATGAGGTTACTGCCATGTTGAAGGAGAGGCTTGGAGTGAAAACAGATAAAAATCTGCCTATGGTAGATTACAGGAAATACTCTCGTGTTAGGAAATGGACAGTTGGAATATCAGGTGGCAAAGAACTGATAGCCATCATTCGGGCCTCAGGTAGCATTAGTCGAGTTAAGAGTCAATTAAGTATCTCTAGCTCAGGCATCATTGCTGAGGAGTTTATTGAGAAGATTCGCACTGTCAGAGAGTCGAAAAGATTTAAGGCCGCTATTATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATTCGTCTTTTAGCTGCTTCAAAACCTGTCATTGCTTCAATGTCTGACGTGGCAGCAAGTGGAGGATACTACATGGCAATGGCAGCTCAAGCTATTGTTGCAGAAAGTCTTACCTTAACGGGTTCAATCGGAGTGGTCACAGGAAAATTTAACCTTGGGAAACTATATGAGAAGATTGGATTTAATAAAGAAATCATATCAAGGGGAAGATATGCTGAGGTCCTTGCTGCTGAACAACGTTCTTTTAGACCAGATGAAGCAGAGCTATTTGCCAAATCTGCACAGAATGCTTACAAACAATTCCGAGACAAGGCAGCTTTATCCAGATCAATGACTGTCTGTTCTAAATTTATTAAGCTTTTTATTCCCGAGCTTTTTTTTTATCCTTCATTCTTATAG 1725 0.4029 MLTLLLPTPPRLTSIHRRNTLSSPSSTSALQFHRRFSSSSSSSSSSFLSLPHTTSRRCNSLRAFDSSSDSKIKEEDKEGAIDGQNVRIADEDYPSGEFEFEPITGWRNFLVKVKMLIAFPWERVRKGSVLTMKLRGQISDQAKSRFSPGLSLPQICENFLKAAYDPRISGVYLHIDSLNCGWGKVEEIRRHILNFKKSGKFVVAYVPTCQEKEYYLASACEEIYAPPSAYFSLFGLSVQASFLRGVLENIGIEPQVERIGKYKSAGDQLARRTMSDENCEMLTALLDNIYTNWLDKVSSAKGKGREDIEKFINEGVYQVDKLKEEGLISNIIYDDEVTAMLKERLGVKTDKNLPMVDYRKYSRVRKWTVGISGGKELIAIIRASGSISRVKSQLSISSSGIIAEEFIEKIRTVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMAAQAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAEVLAAEQRSFRPDEAELFAKSAQNAYKQFRDKAALSRSMTVCSKFIKLFIPELFFYPSFL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01612 574 Gene3D - 127 270 - -
Car01g01612 574 Gene3D - 271 363 - -
Car01g01612 574 SUPERFAMILY ClpP/crotonase 378 554 IPR029045 -
Car01g01612 574 PANTHER PROTEASE 4 53 555 - -
Car01g01612 574 SUPERFAMILY ClpP/crotonase 113 333 IPR029045 -
Car01g01612 574 CDD S49_SppA_67K_type 130 343 - -
Car01g01612 574 CDD S49_Sppa_N_C 378 555 IPR002142 GO:0006508|GO:0008233
Car01g01612 574 Pfam Peptidase family S49 195 347 IPR002142 GO:0006508|GO:0008233
Car01g01612 574 Pfam Peptidase family S49 446 555 IPR002142 GO:0006508|GO:0008233
Car01g01612 574 Gene3D - 374 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01612 Car-Chr1 34428138 34438311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01612 K04773 - gmx:100781522 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00860 07 7597912 7606696 Car01g01612 01 34428138 34438311 PCT