Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01551 ATGTTAAAAGTTTTTATACATGTAACAGTTAAAATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTTCTTGCCAGCACATAAACTTCAAGAAGAGGGATGCATGCCAAAATTGTGGATACCCTAAGATTGGAGGCCCTGATCCAGAAACATATAGATACAACTGGACCTTGGCAGGGGACTGGTATTGCAATGGTAGGAACTGTGGAGCACACAACTATGCTAGCAGAACAAGCTGTTATAGATGTGGTGCATTGAAAAGTTCTTATTCTTGTGGATTTGGTGGAAACATGGAAGCCTCTGATTGCAATTACCCTCCAGGATGGAAAACTGGTGACTGGATTTGTACTAGATATGGCTGTGGAGTGCATAACTATGCAAGCAGAACAGAATGCTTTAAGTGCAAAACACCTAAAACTTTTGGTGGTTCAGATTGA 435 0.4161 MLKVFIHVTVKMSWSGGDWMCGSCQHINFKKRDACQNCGYPKIGGPDPETYRYNWTLAGDWYCNGRNCGAHNYASRTSCYRCGALKSSYSCGFGGNMEASDCNYPPGWKTGDWICTRYGCGVHNYASRTECFKCKTPKTFGGSD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01551 144 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 8 140 - -
Car01g01551 144 ProSiteProfiles Zinc finger RanBP2 type profile. 15 44 IPR001876 -
Car01g01551 144 Gene3D - 99 140 - -
Car01g01551 144 Gene3D - 8 46 - -
Car01g01551 144 Gene3D - 56 88 - -
Car01g01551 144 ProSitePatterns Zinc finger RanBP2-type signature. 61 82 IPR001876 -
Car01g01551 144 Pfam Zn-finger in Ran binding protein and others 109 138 IPR001876 -
Car01g01551 144 Pfam Zn-finger in Ran binding protein and others 58 87 IPR001876 -
Car01g01551 144 ProSiteProfiles Zinc finger RanBP2 type profile. 57 88 IPR001876 -
Car01g01551 144 SUPERFAMILY Ran binding protein zinc finger-like 56 88 IPR036443 -
Car01g01551 144 SUPERFAMILY Ran binding protein zinc finger-like 105 140 IPR036443 -
Car01g01551 144 SUPERFAMILY Ran binding protein zinc finger-like 11 44 IPR036443 -
Car01g01551 144 ProSiteProfiles Zinc finger RanBP2 type profile. 109 140 IPR001876 -
Car01g01551 144 ProSitePatterns Zinc finger RanBP2-type signature. 113 134 IPR001876 -
Car01g01551 144 PANTHER ZINC FINGER PROTEIN 8 140 - -
Car01g01551 144 ProSitePatterns Zinc finger RanBP2-type signature. 19 38 IPR001876 -
Car01g01551 144 SMART zf_4 111 137 IPR001876 -
Car01g01551 144 SMART zf_4 59 85 IPR001876 -
Car01g01551 144 SMART zf_4 17 41 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01551 Car-Chr1 32387910 32389029 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01551 - - gmx:100792208 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01551 01 32387910 32389029 Car06g02366 06 25703881 25706149 ECH
Car01g01551 01 32387910 32389029 Car01g01551 01 32387910 32389029 ECH
Car07g00784 07 6928773 6930865 Car01g01551 01 32387910 32389029 PCT