Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01546 ATGACAGAATCAAAACCAGACACACCCTTGTTGCCGCCATCGTCGCAGATCCTTCCCGACTTCAAAAAATCTGTTAAATTGAAATATGTGAAGCTTGGCTATCATTACCTAATAACCCATGCCATGTACCTCTTCCTTTCCCCACTTGTTGTGTTAATTGCTGCACAACTCTCCACTTTCTCACTCAAAGATGTCTATGATATTTGGGAAAATCTACAATACAACCTTGTATCTGTCATAATTTGTTCGACCCTCCTTGTATTTTTATCGACCCTATACTTTATGACTCGTCCGAGGCCGGTGTACCTTGTCAATTTCTCATGTTACAAGCCTGAAGAATCTAGGAAATGCACAAAAAGAATATTTATGAATCACTCCAAGGCAAGTGGTTTCTTCACAGAGGAAAACCTTGAATTCCAGCGAAAGATTCTCGAGAGATCTGGGCTTGGGGAAAATACTTACCTTCCAGAGGCTGTTCTCAGCATTCCTCCCAACCCTTCAATGAAAGAAGCTAGGAGAGAAGCTGAGGCAGTTATGTTTGGTGCTATCGACGAGCTATTTTCCAAGACGTCGGTGAAGCCTAAAGACATTGGAATTCTGATTGTGAATTGTAGTCTCTTCTGTCCCACTCCGTCGCTTTCTGCAATGATCATCAATCACTATAAGCTTAGAGGTAACATAAAGAGCTACAACCTTGGTGGGATGGGATGCAGTGCAGGGATTATTTCGATTGATCTTGCTAAAGAGCTTCTCCAGGTTCATCCTAACTCGTACGCATTGGTTGTTAGCATGGAGAACATCACATTGAATTGGTATCCTGGGAATGATCGCTCCAAACTTGTTTCAAATTGTTTGTTCCGAATGGGAGGGGCTGCAATTCTACTTTCAAATAAGGGCTCCGACAGGAGAAGATCCAAATACCAATTGGTCCACACCGTTCGCACTAACAAAGGTGCTGATGACAAGTGCTTCAGCTGTGTTACACAAGAAGAAGATGAAAATGGTAAAGTTGGTGTCACTTTATCGAAAGATCTTATGGCAGTTGCGGGCGATGCTTTGAAAACAAACATCACCACACTGGGGCCTCTTGTCCTACCAACATCCGAACAGCTTCTGTTCTTCGGCACTTTAGTTGGAAAGAAACTATTCAAGATGAAGATCAAGCCTTATATTCCAGATTTCAAGCTAGCTTTCGAACATTTCTGCATTCATGCCGGTGGAAGAGCTGTTTTGGATGAGCTGGAGAAAAACTTGAAGCTATCTCCTTGGCATATGGAGCCGTCAAGAATGACGCTCTATCGTTTTGGAAACACCTCGAGCAGTTCACTTTGGTACGAATTGGCTTACACAGAAGCCAAGGGAAGGATCAAGAAAGGAGATAGAACATGGCAAATAGCATTCGGTTCTGGATTCAAGTGCAACAGTGCAGTATGGAAGGCTCTCAGGACAATCAATCCTGCGAAAGAGAAGAACCCTTGGATTGATGAGATCCACCATTTTCCGGTTGATGTTCCAAGGATTTCTGCCATTTAA 1533 0.4299 MTESKPDTPLLPPSSQILPDFKKSVKLKYVKLGYHYLITHAMYLFLSPLVVLIAAQLSTFSLKDVYDIWENLQYNLVSVIICSTLLVFLSTLYFMTRPRPVYLVNFSCYKPEESRKCTKRIFMNHSKASGFFTEENLEFQRKILERSGLGENTYLPEAVLSIPPNPSMKEARREAEAVMFGAIDELFSKTSVKPKDIGILIVNCSLFCPTPSLSAMIINHYKLRGNIKSYNLGGMGCSAGIISIDLAKELLQVHPNSYALVVSMENITLNWYPGNDRSKLVSNCLFRMGGAAILLSNKGSDRRRSKYQLVHTVRTNKGADDKCFSCVTQEEDENGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFGTLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPAKEKNPWIDEIHHFPVDVPRISAI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01546 510 PANTHER 3-KETOACYL-COA SYNTHASE 3 509 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car01g01546 510 CDD CHS_like 86 478 - -
Car01g01546 510 SUPERFAMILY Thiolase-like 310 479 IPR016039 GO:0016746
Car01g01546 510 SUPERFAMILY Thiolase-like 87 305 IPR016039 GO:0016746
Car01g01546 510 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 399 479 IPR013747 -
Car01g01546 510 PANTHER 3-KETOACYL-COA SYNTHASE 11 3 509 - -
Car01g01546 510 PIRSF Very_long_ch_3-ktacl-CoA_syn 20 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car01g01546 510 Pfam FAE1/Type III polyketide synthase-like protein 93 382 IPR013601 GO:0006633|GO:0016020|GO:0016747
Car01g01546 510 Gene3D - 105 480 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01546 Car-Chr1 31871558 31874336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01546 9 510 Miscellaneous Gene Families AT2G26640 83.068 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01546 K15397 - gmx:100794273 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01546 01 31871558 31874336 Car01g01546 01 31871558 31874336 ECH
Car07g00800 07 7099028 7101500 Car01g01546 01 31871558 31874336 PCT