Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01225 ATGATGTTGTCAAGAATGGAAAGTGGTAAGAAGAATGGTGGGGTTTCTAGTAACCAAAAGAAATTACTAAAGGATGTTGAAACTATGAATAAAGCTATGTATTTGGATAGAAATTCTTCAAGGAATTCACTATCTGGTTCGAGTTCGAGTTCTCAATCTAAAACCGTAGGAAAATCTGTTTTTCGGGATCCGAAACCAAGGCCTAAAGGAAGTAGTAATAGTAATGATGATAATGATGGTTTGCAGAAGGATAAAAGGTCTATATGGAATTGGAGGCCATTGAAGGCCCTTTCACATATCCGTAATAAGAGGTTCAATTGTAGTTTTTATCTCCATGTACATTTGGTTGAAGGATTGCCTTCCACTTTTGATGATTTGAGTCTTTCAGTGTATTGGAAGAGAAGGGACGGGGTTTTGGTGACCCGTCCAGCGAAGGTGATTCAGTGTGTGGCTGAATTTGATGAAAAGTTGACTTATACTTGCTCAGTTTATGGCAGTAGGAGTGGACCTCACCATTCTGCGAAGTATGAAGCAAAGCACTTTTTGCTCTACGCTTCGCTTCTTAGTGCGCCGGATCTTGATTTGGGGAAACATCGAGTTGATCTCACGAGGTTGCTTCCTCTCACTCTAGAGGAGCTTGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACTAGTTTCAGGTTATCAGGAAAGGCTAAGGGTGCTGTGATGAATGTCAGTTTCGGGTATACGGTTGTTGGTGAAAACACCAGCTCGACAAGAGATGGACTTAATGCTCCTAATGTGTTGACTTCAAGGCAAAATAGTATTTCTTTGATGAAACCGGACGTTAAACACCGACAGTTTGATGGAAGCAGCAGCGTGAGGCGCGCTGGAAGTTTACAAAACTTTAGCAGTCGGGATTCCTCCCAAGCTACAGAAGAGGTAAAGGATCTTCATGAGGTGTTGCCGTCGTCAAAGTCTGCACTAGCCAGCTCAATAGACGCCTTATATAAGAAATTTGATGAAGCAAAAGCATGTGGCTCTATTGACAATGAACCTGATTCTGATATGTCAAAAGAAAATCTTGAACCAATCAAACAAGATGCCCTTACTTCATTTGACGTTGGAAAAGAAACGCCTGAAGTGCAGGCTGTTAATGATGGAAATACATGTCTGTTGCTTGACACACCTGAACTCGATGTATTTCAAGAAAATGTGGAGACAGATAAACCAGTATACTATCTTTTACTTGACTCTGAAAAAGAAAAAACTGAAGGCTGTCAAGATAATGAGTTTTTTGTTGTCGATAAGGGTTTTGAAACCTCACCAATTGAAACCTCACCAATTGAAACTGTTAAAGGAGAGGAGTCATTCAACAAGGCTTCTGAAGATGCTTCCACAGTTGACAGTACCTTCATCGTTGATACTGCAGGCTGCTTACAAGTATCTTCTGAAGATAGTATTATACATGATTCTGTTGATGAGACAAATGATGGTTGTAAGGATGAGGCAGTGGTAGATGAATCTGCTTGCGAAGTGGATGATTTGTACACAGATGAACTGCTGCAAGAATTAGAATCAGCTATAAATAGTGTCTCAGATTTGGAGACAGTGGCTCTGGAGTCTCCTAAATTTGTGGAATCCAAATCTGAACATATGATGAGAAAGACACATAGCTTAGACGATGTTACAGAATCGGTTGCTAACGAATTTTTAAGCATGCTTGACATAGACCATAGTCCGGCAGGCTTGAACTATGAAAGCGAGCCCGAGTCCCCAAGAGAACTTCTTTTAAGAGAGTTTGAGAAGGAAGCCCTGGATGGGGGCTTCTCCTTATTTGGTTTTGATATGGAATGTGACAATGTATCTGATGATGGCTATGATGCTTCTAATGGGTCTGACCAGTGGAACTTCTCTGAGGCTATTCATTCATCATCGATGTTCCAACACCTGCAGAAGGAGCATCTAGTTGAGTCTCACGACGGGAGGAGCAAACAAAAGGCTCAAATGCTAGAAGATTTGGAGACTGAAGTCTTAATGCGTGAATGGGGTTTGAACGAGAAAGCTTTTCATCATTCTCCGCCAAAAGATTTTACTGGTTTCGGAAGTCCAATTCAATTACCACCTGAAGAGCCTCCGATGTTGCCTCCTCTTGCCGAGGGATTAGGCCCTTTTCTTCAGACAAAAGATGGGGGTTATCTACGGTCTATGAATCCCACACTTTTCAGCAATACTAAAGCTAGTGGGAGTTTAATCATGCAGGTTTCCAACCCTGTTGTTGTACCTGCAGAAATGGGATCCGGAATAATGGAAATTTTACAGTGTTTGGCTTCAGTTGGAATTGAAAAACTCTCGATGCAAGCAAAGGAGTTAATGCCACTGGAAGATGTCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTGCCTTAGAGGGAACAGAGAGGCAATATCATTTGCAGCATGATGATTCAGTAACAGGGCAATATACTACTCGTGTGCAACCATCTGGACTGAAGTCTGGCAATTTTAATTCACGTTTAGTGGCCAACCAGACAGGCTCAGAGTTTGTTTCAATTGAAGATCTTGCGCCGTTGGCTATGAACAAAATTGAAGCACTTTCGATGGAGGGGTTGAGAATACAATCCGGGATGTCGGAAGAGGATGCACCATCAAACATTGTTGCCCAATCGATTGGGGAAATGTCAACTCTCCAAGGCAAGGGCATTGATATTAACAGTTCCCTCGGCATGGAAGGAGCTGCTGGTCTGCAGTTGATGGATGTAAAAGAAAGCAGCGACAGTGTTGATGGGATAATGAGCCTGTCGTTAACTCTTGATGAGTGGATGAAGCTGGATTCTGGTGAAATCGATGATGTAGATAACATCAGCGAGCATACTTCGAAACTTCTTGCAGCCCATCATGCTAACTCGTTCGACTTTATCCGTGGGAGTTCAAAAGGAGGAGATAGGAGACGAGGCAAAGGCTCTGCTAGAAGATGCGGTTTGCTAGGAAACAATTTCACAGTTGCGTTAATGGTGCAGCTTCGTGATCCTCTGAGAAATTATGAGCCTGTTGGAACACCGATGCTTGCACTTATACAAGTCGAGAGAGAGTTTGTCTTACCAAAGCAAAAAATTTATTGTAGTGTGTCTGAGTTATGGAACAACAACAACGAGGACAATGAGAGCGAAATAGTTGCAAAGGTGGAGGTGAAGGACACTGATAAAGAGGAGAAAATTTCTGAAGCAGAACTCATTCCTCAGTACAAGATTACTGAAGTTCATGTGGCAGGTCTTAAAACTGAGCCTCAGAAAAAGAAGATTTGGGGAACTTCGACCCAGCAGCAATCTGGTTCGCGATGGTTGCTTGCTAATGGAATGGGGAAGAATAACAAGTTTTCATCGATTAAGTCAAAGGCTGCATGTAAATCTGTTGCTCCAGTTACCACAAAGGTGCAGCCGAGTGATACCTTGTGGAGCATTTCTTCGCGTATTTTTGGTTCTGCTAAAAAGTGGAAGGAATTGGCAGTACTAAATCCAAATATAAGAAACCCTAATGTCATTATACCAAATGAAACTATTAGACTTAGTTGA 3585 0.4226 MMLSRMESGKKNGGVSSNQKKLLKDVETMNKAMYLDRNSSRNSLSGSSSSSQSKTVGKSVFRDPKPRPKGSSNSNDDNDGLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHVHLVEGLPSTFDDLSLSVYWKRRDGVLVTRPAKVIQCVAEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPDLDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAKGAVMNVSFGYTVVGENTSSTRDGLNAPNVLTSRQNSISLMKPDVKHRQFDGSSSVRRAGSLQNFSSRDSSQATEEVKDLHEVLPSSKSALASSIDALYKKFDEAKACGSIDNEPDSDMSKENLEPIKQDALTSFDVGKETPEVQAVNDGNTCLLLDTPELDVFQENVETDKPVYYLLLDSEKEKTEGCQDNEFFVVDKGFETSPIETSPIETVKGEESFNKASEDASTVDSTFIVDTAGCLQVSSEDSIIHDSVDETNDGCKDEAVVDESACEVDDLYTDELLQELESAINSVSDLETVALESPKFVESKSEHMMRKTHSLDDVTESVANEFLSMLDIDHSPAGLNYESEPESPRELLLREFEKEALDGGFSLFGFDMECDNVSDDGYDASNGSDQWNFSEAIHSSSMFQHLQKEHLVESHDGRSKQKAQMLEDLETEVLMREWGLNEKAFHHSPPKDFTGFGSPIQLPPEEPPMLPPLAEGLGPFLQTKDGGYLRSMNPTLFSNTKASGSLIMQVSNPVVVPAEMGSGIMEILQCLASVGIEKLSMQAKELMPLEDVTGKTMQQVAWEAMPALEGTERQYHLQHDDSVTGQYTTRVQPSGLKSGNFNSRLVANQTGSEFVSIEDLAPLAMNKIEALSMEGLRIQSGMSEEDAPSNIVAQSIGEMSTLQGKGIDINSSLGMEGAAGLQLMDVKESSDSVDGIMSLSLTLDEWMKLDSGEIDDVDNISEHTSKLLAAHHANSFDFIRGSSKGGDRRRGKGSARRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKQKIYCSVSELWNNNNEDNESEIVAKVEVKDTDKEEKISEAELIPQYKITEVHVAGLKTEPQKKKIWGTSTQQQSGSRWLLANGMGKNNKFSSIKSKAACKSVAPVTTKVQPSDTLWSISSRIFGSAKKWKELAVLNPNIRNPNVIIPNETIRLS 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01225 1194 CDD LysM 1148 1193 IPR018392 -
Car01g01225 1194 ProSiteProfiles LysM domain profile. 1145 1193 IPR018392 -
Car01g01225 1194 Pfam LysM domain 1148 1193 IPR018392 -
Car01g01225 1194 SMART LysM_2 1146 1194 IPR018392 -
Car01g01225 1194 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1193 IPR039614 -
Car01g01225 1194 MobiDBLite consensus disorder prediction 279 308 - -
Car01g01225 1194 MobiDBLite consensus disorder prediction 1 82 - -
Car01g01225 1194 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1193 - -
Car01g01225 1194 MobiDBLite consensus disorder prediction 60 82 - -
Car01g01225 1194 MobiDBLite consensus disorder prediction 33 58 - -
Car01g01225 1194 Gene3D LysM domain 1135 1194 IPR036779 -
Car01g01225 1194 MobiDBLite consensus disorder prediction 286 303 - -
Car01g01225 1194 ProSiteProfiles C2 NT-type domain profile. 97 245 IPR019448 -
Car01g01225 1194 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 102 248 IPR019448 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01225 Car-Chr1 15075249 15079909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01225 - - mtr:MTR_2g040970 1881.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01225 01 15075249 15079909 Car01g01225 01 15075249 15079909 ECH
Car07g00355 07 3160728 3164562 Car01g01225 01 15075249 15079909 PCT