Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00971 ATGTGCTACCCAAGTTTCTATAAATACCATCCCTCACTATGTCATAAACCGCATCACAAACattatatattatataataactcctcctatattttttgttgcatctatataatatatatcatGGGTGTTTTTTCTTTCGATGATGAACTCCACTCAACTATTGTTCCAGCTAAACTCTACAAAGCTCTTGCTAAAGATGCTGATGATATAGTTCCAAAGGTTATTGAGGCCATCCAAAGTGTTGAAATTGTTGAAGGAAATGGAGGACCCGGAACCATCAAGAAGCTAACCGCTGTTCATGGTGGCAAAACAAGCTATGTGCTACACAAATTAGATGCAATTGATGAAGCAAACTTTGGATATAACTACAGCTTAGTGGGAGGAACAGATGTGGATGAAAGTTTAGAGAAAGTTACATTTGAGACAAAGATAGTGGCTGGTCCATCTGGTGGGTCCATAGTGAAAATCTCAGTGAAATATCACACCAAAGGCGATTTAGTTTTATCTGATGCAGTGCGTGATGAAACAAAAGCCAAAGGAACTGGACTTCTTAAGGCCATTGAGGGTTACGTTTTGGCTAATCCTGATTACTAA 594 0.3603 MCYPSFYKYHPSLCHKPHHKHYILYNNSSYIFCCIYIIYIMGVFSFDDELHSTIVPAKLYKALAKDADDIVPKVIEAIQSVEIVEGNGGPGTIKKLTAVHGGKTSYVLHKLDAIDEANFGYNYSLVGGTDVDESLEKVTFETKIVAGPSGGSIVKISVKYHTKGDLVLSDAVRDETKAKGTGLLKAIEGYVLANPDY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00971 197 SUPERFAMILY Bet v1-like 42 197 - -
Car01g00971 197 PANTHER - 41 197 - -
Car01g00971 197 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 128 160 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 PRINTS Major pollen allergen Bet V1 signature 43 63 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 PRINTS Major pollen allergen Bet V1 signature 66 76 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 PRINTS Major pollen allergen Bet V1 signature 89 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 PRINTS Major pollen allergen Bet V1 signature 105 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 PRINTS Major pollen allergen Bet V1 signature 124 137 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 PRINTS Major pollen allergen Bet V1 signature 149 165 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 PRINTS Major pollen allergen Bet V1 signature 183 193 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00971 197 Gene3D - 42 197 IPR023393 -
Car01g00971 197 Pfam Pathogenesis-related protein Bet v 1 family 41 194 IPR000916 GO:0006952
Car01g00971 197 PANTHER ABA-RESPONSIVE PROTEIN 41 197 - -
Car01g00971 197 CDD Bet_v1-like 44 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00971 Car-Chr1 9091687 9093157 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00971 - - gmx:100500525 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00971 01 9091687 9093157 Car01g00971 01 9091687 9093157 ECH
Car01g00971 01 9091687 9093157 Car07g00533 07 4722787 4724466 PCT